1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCAAATGAGGAGTCCTTAAGCAGAAAGGACATATTGGAGAGGGTTGATAGGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgcttattcatttttgtgatttgtgtctcatggaagatgccaagccgtactttagctcctggcaattcttgaaattgcattattttttatatacttgctgttgtcttcacttcgtgtcctatcacaaggttctgacgtctatgctatcttaattaaccgcag
species | Zea mays |
transcript | GRMZM2G112337_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|148995697|gb|EE034920.2|EE034920
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|71771989|gb|DR969926.1|DR969926
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|67021761|gb|CO450510.1|CO450510
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|71773221|gb|DR971130.1|DR971130
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|148928684|gb|EC873287.2|EC873287
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|89249959|gb|DY621745.1|DY621745
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|71306089|gb|DR789194.1|DR789194
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|71435944|gb|DR816994.1|DR816994
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCC-G GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|149098529|gb|EE184515.2|EE184515
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|60351440|gb|DN218413.1|DN218413
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|149078381|gb|EE167156.2|EE167156
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|89763677|gb|DY690772.1|DY690772
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|67020793|gb|CO449542.1|CO449542
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|149088740|gb|EE177864.2|EE177864
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGTEST: gi|194716932|gb|FK934091.1|FK934091
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGTACAGTGCAACTCGGGGTGCACATCTGAATCTGAAGCGT
EST: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGG GACGATAACAGGT
genomic: GGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgct ... ttaaccgcagGACGATAACAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAATGAGGAGTCCTTAAGCAGAAAGGACATATTGGAGAGGGTTGATAGGTGGATGTCAGCATGTGAAGAAGAAAGCTGGCTTGAAGACTACAGCCGGgtatgctgcttattcatttttgtgatttgtgtctcatggaagatgccaagccgtactttagctcctggcaattcttgaaattgcattattttttatatacttgctgttgtcttcacttcgtgtcctatcacaaggttctgacgtctatgctatcttaattaaccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA