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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagttttttctag

Basic information

species Zea mays
transcript GRMZM2G110834_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactt-tcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagttttttctag---
|||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   || |||||||| || | ||| |||||||||||| ||||  |||  | || |  |     |  |||      | | ||    |||||||||||||||||||||||||||| ||| |||||   
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgca-----aagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactt-tcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagttttttctag---
|||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   || |||||||| || | ||| |||||||||||| ||||  |||  | || |  |     |  |||      | | ||    |||||||||||||||||||||||||||| ||| |||||   
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgca-----aagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagtt--ttttctag
|| | || || ||||| |||||  |||| || || |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| |||||  |||||  ||    |||| | |  |||  | || | ||  |||||  |   | || |    ||||    ||    || |   ||||| | | |||  ||  | ||  ||
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttcac-aacctatgtt----tttgctta--ttctctcctaaaattattttg-ttcttcgctttatcatatttgg-atataacatggggctgatat-attatgcttcatctttcag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 7
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttga-atatagttttttctag
|| | || |||||||| |||||  |||| || || |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| ||||     | || ||  ||||||   |  |||  | || | ||| |||||  |     || |    ||||    |     || |   || || |   || |    ||||  ||
AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttca-----caacctttgtttttgccta--ttctctcctaaaatagttttg-ttctttgctttatcatatttgg-aaataacatggggcttatatattatgtttcatttttcag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv17s0000g03010.t01 (Vitis vinifera), 5'ss of exon 6
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccg---acctactttcctttttgttca---atttcgtttctcatatactt----ttgact--aagcactcttgactattcattatgcttcaagttactgatttgaatatagttttttctag
|| | |||||||||||||||||| | ||||||||||| ||||| || ||  ||||    ||||||||||| ||||||||||||||||| ||| |||||| |   ||  |||||  ||| |   ||   | |  |||| |   |||  |    |    |  ||  ||    | |   | | |  | ||    ||  |  |||   | |  |||||| |||
AACTTCCTGAAAGATCATATGGATCAGATTGCCGCATTTATGTGCCAGAGAATCCCTCGAGCAGGTTTAAGAATGTTTATgtatgatgtctttattcacagttcactcactttaatttctacacatttactctgtttatggcatatctaaactcagttttaaataccacaggcgtctaacttggtttttgattttttgtttt--tttgtttttttttag

upper sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactttcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaag-ttactgatttgaatatagttttttctag
|| | ||||||||||| |||||  ||||||||||||| ||||| |||||  |||| |  ||||||||||| ||||||||||||||||   |      | | |   |||| |    |||||    |  ||| | |   |  |  |||| |  ||   |  |      |||  |   ||||  | |||||||   |   ||| |||||||
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgat--ttctcacaatccattcactt-caaaattgtttgtgtatgttccac---tgttcctgac-ataca---tcaatatgatattgggaggcaagacttctgatttt--ttctgttgtttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240999|gb|DT648913.1|DT648913
EST:     GCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTAT                         GAGATAATTTTTGATGAGTTTGTTATCGCTCATATCC
genomic: GCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgac ... ttttttctagGAGATAATTTTTGATGAGTTTGTTATCGCTCATATCC