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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttgttttctatttttggtaacattcagtgcaatacattatacatctattgcttgcttttctatgtgcaagttgtttgaaatggaatggaatgt...

Basic information

species Zea mays
transcript GRMZM2G110398_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110398_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g65986.1 (Oryza sativa), 5'ss of exon 7
GCTCTTGATACTTTCAACACAGCAGTTGTATCACCGATATACTATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttgttttctatttttggtaacattcagtgcaatacattatacatctatt--gcttg-cttttctatgtgcaagtt-gtttgaaatggaatggaatgt
|||||||| || ||||| || |||||||| || || ||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| | ||  || | | ||      | || ||   ||    |  ||| | ||  ||||  |||||  |  |||||||| |    ||||| |    |    
GCTCTTGACACATTCAATACTGCAGTTGTTTCGCCTATATATTATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAGgtaacatcttttggct-tctatgaccttctgcattgatgtatgccaggcatttctttagcttaacttttaaaactgcaagtttggcataaatgaagcaaag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148966487|gb|EE017504.2|EE017504
EST:     ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG                         GACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
genomic: ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttg ... cttgcatcagGACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
EST: gi|60342405|gb|DN209378.1|DN209378
EST:     ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG                         GACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
genomic: ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttg ... cttgcatcagGACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
EST: gi|71759889|gb|DR957826.1|DR957826
EST:     ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG                         GACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
genomic: ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttg ... cttgcatcagGACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
EST: gi|71442597|gb|DR823647.1|DR823647
EST:     ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG                         GACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
genomic: ATACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttg ... cttgcatcagGACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
EST: gi|37381314|gb|CF627534.1|CF627534
EST:     TACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAG                         GACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT
genomic: TACAATGTTCACGTCACTAACCATTTTGGCTAGCGTGATAATGTTCAAGgtaacatttg ... cttgcatcagGACTGGGATCGTCAAAATCCAACTCAAATTGTAACAGAGATGTGTGGTTTT