Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaatttttattttgcttcattgttgatgtttcttcagcatttctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g01890.1 (Oryza sativa), 5'ss of exon 7
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaat-ttttattttgcttcat-tgttgatgtttcttcag-catttctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag
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GAAAGATCGTCCATCTTGGTTCCGTGATTGTCGAAACCTGGAAGTCTTTACAATGATTCCAGCAGGAAATGGAGGAACGGTTGAACTTGTCTACACACAGgtgaacactgtttcattttacattgtataatggtatatcctcagtcttctctatcaatgcatgtgcttcatgccatgaacattattacttgtttttgcttacag
upper sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 6
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgc---aatttttattttgcttcattgttgatgtttcttcagcat-ttctggtgagc-tgcatgactcattacgtggatggtaatatttgtatgttattgcag
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TAAAGATCGTCCATCTTGGTTCCGTGACTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGAACCATTGAACTTGTTTACACGCAGgtgagcctcaaatttaagacttatttgttggttctgttttttttttttgttcctatgattatacttaatttgctacag----------------------------
upper sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 6
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaatttttattttgcttcattgttgatgtttcttcagcatttctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag
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TAAAGATCGTCCATCTTGGTTCCGTGACTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGAACCATTGAACTTGTTTACACACAGgtgagcctcaaatttaagacttctttgtca--gttccgtttttgtttttgttgttcc-tgtgagta--tacttaaattgctacag----------------
upper sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 6
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaatttttattttgcttcattgttgat-----gtttcttcagcatttctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag--------------------
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CAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAGTTTTCACCATGTTTCCAGCTGGAAATGGAGGAACTGTTGAACTCTTATACACACAGgtaaacgacaatagctttttgatgggagtaaacgacagcattttgaatatctcaaatcttctttgaatatcctgtattgaaattcagcttgtctggactaatgaatacaaacaaaatgcctttcag
upper sequence: GRMZM2G109987_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv13s0019g04320.t01 (Vitis vinifera), 5'ss of exon 6
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaa-------------tttttattttgcttcattgttgatgtttcttcagcatt----tctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag
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CAAAGACCGACAATCTTGGTTCAGAGATTGTCGGAAACTGGAAGTCTTCGCCAAGTTTCCAGCGGGAAATGGGGGAATACTTGAACTGATATACATGCAAgtgagcagaagtggttgaatgttgttactttattttcttgcatctgggtttacagcagcatagtatggaggtttaaccttttgatttccttaataa-agcactaatattttctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21809883|gb|BQ668201.1|BQ668201EST: CAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAG ATGTATGCCCCAACAACTTTAGTCCCTGCACGTGATTTTTGGACACTACGA
genomic: CAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaatt ... gttattgcagATGTATGCCCCAACAACTTTAGTCCCTGCACGTGATTTTTGGACACTACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGATCGTCCCTCTTGGTTCCGTGATTGCCGAAGTCTTGAAGTGTTTACAAGGTTTCCAGCTGGAAATGGGGGAACAATTGAACTTATTTACATGCAGgtgtgcaatttttattttgcttcattgttgatgtttcttcagcatttctggtgagctgcatgactcattacgtggatggtaatatttgtatgttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA