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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaacttgttatttcgtgtttttttccattgaagtgagaatatcgatgctttatatcattacatgttacttggatcatgttatgttcacaagggaatctaatgatttaattactgacatcaattccag

Basic information

species Zea mays
transcript GRMZM2G109383_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 7
TTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaacttgttatttcgtgttttt---ttccattgaagtgagaat--atcgatgctttat-----atcattacatgttacttggatcatgttatgttcacaagggaatctaatgatttaattactgacat-----caattccag
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TCGATATTTCTGTTGTAGGTGTCACTACCTTCAGTGGACCTGAAGGCCCTTTTGATGTTGATGTTTTTGACTCTACTATAGATTACATAAAGTTAATGAAgtaagttgctt-ccatttgaatttactgaatgctatttccatatgtattgttcgatgttttcttttcaataagtgaattttccttgtagcttcataagaacctgcgaaaaatgggtgatttaatttgtaatttgtatttaattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211163859|gb|FL345453.1|FL345453
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGAATACATAAAGTTAATGGA                         GTTCA-TTTTTGACTTCGAA
genomic: TT-GATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGA-CAATTTTTGACTTCGAA
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCC
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCC
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGT-AATGGAA                         GACA-TTTTTGACTTCGAAGCAATAAAAA-GCTGCTGACCTCCCCAAAGT
genomic: TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATG-AAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGT
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGT-AATGAA                         GACAGTTTTTGACTTCGAAAGCA-TAAAAAA
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAA
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAAGCA-TAAAAA-GCTGCTGACCTCCC-AA-GT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAAGCTGCTGACCTCCCCAAAGT
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTA-TGAA                         GTCAATTTTTGACTTCGAAGCA-TAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TT-GATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAAGCA-TAAAAA-GCTGCTGACC
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAAGCTGCTGACC
EST: gi|67025909|gb|CO454658.1|CO454658
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTT
EST: gi|31353391|gb|CD437748.1|CD437748
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGAATACATAAAGTTAATGAA                         GACAATTTTTGAC
genomic: TT-GATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGAC
EST: gi|211258211|gb|FL352267.1|FL352267
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAA
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAA
EST: gi|60351436|gb|DN218409.1|DN218409
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAAGCA-TAAAAAAGCTGCTGACCTCCCCAA-GT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAAAGCTGCTGACCTCCCCAAAGT
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     TTTGATGTGGATGTATTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GGACATTTTTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagG-ACAATTTTT
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GTCAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAAGT-AATGAA                         GACAATTTTTGACTTCGAAAGCA-TAAAAA
genomic: TTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAA-GTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAA-GCAATAAAAA
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAAGT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAA-GT
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAA-GCTGCTGACCCTCCCCAA-GT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACC-TCCCCAAAGT
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAA                         GACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT
genomic: TTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGAAgtaagtaact ... tcaattccagGACAATTTTTGACTTCGAAGCAATAAAAAAGCTGCTGACCTCCCCAAAGTT