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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAGgtattttagaccagcgatgtttttttatcattccctgttatgttctttcaactgacatttcttgttattattttgttgaag

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g47220.3 (Oryza sativa), 5'ss of exon 1
-------------------------------GTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAGgtattttagaccagcgatgtttttttatcattccctgttatgttctttcaactgacatttcttgttattattttgttgaag
                               || || ||||||||||||||||  || |||||||||||||||||||| ||| || | ||||||||||||||||||||    |  |||||    |     || |||| ||||  | ||||||||| ||||||         | | ||||||
GATTGTAAGCAAAATGTGCACTGATCTATAGGTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaactgaaagatgtaccctc----tttcctgctatgaaccttcaactgatatttctc-------ctatattgaag

upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g47220.1 (Oryza sativa), 5'ss of exon 6
GTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAGgtattttagaccagcgatgtttttttatcattccctgttatgttctttcaactgacatttcttgttattattttgttgaag
|| || ||||||||||||||||  || |||||||||||||||||||| ||| || | ||||||||||||||||||||    |  |||||    |     || |||| ||||  | ||||||||| ||||||         | | ||||||
GTGGCAGTTAAGAAAATGAAGAGGAAATATTATTCTTTTGAGGAATGCATGAGTCTACGTGAAGTAAAGgtattttaactgaaagatgtaccctc----tttcctgctatgaaccttcaactgatatttctc-------ctatattgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961778|gb|CN844487.1|CN844487
EST:     AGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: AGAAAAAGTATTATTCTTTTGAGGAATGTATGGGTTTGCGTGAAGTAAAGgtattttaga ... tttgttgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
EST: gi|67011156|gb|CO439905.1|CO439905
EST:     GGGTTTGCGTGAAGTAAAG                         TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC
genomic: GGGTTTGCGTGAAGTAAAGgtattttaga ... tttgttgaagTCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATC