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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGGTGAGGTTGTCAAATGGGAAGGAGTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTGgtaattcaaattatcttcaattggaactttcaaaagaggaaaaaactagctctttctgtttcactcattgcagtttttaatttacttgaatgtacag

Basic information

species Zea mays
transcript GRMZM2G108457_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108457_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 5'ss of exon 7
GTTGGGGTGAGGTTGTCAAATGGGAAGGAGTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTGgtaattcaaattatc----ttcaattggaactttcaaaagaggaaaaaact-agctctttctgtttcactcattgcagtttttaa----tttacttgaa-tgtacag-----------------------------------------------------------------------------
||||| || ||||| ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| |||||||||||| |   |||||    || | ||| ||  |         |   ||| | |  | || |  | | | |   || |  ||| |     ||| ||  || |  |||                                                                              
GTTGGAGTCAGGTTATCAAATGGGAAGGAGTTCTTTGCTAAAACAGTGATATCGAATGCTACCAGATGGGATACATTTGgtaatcctgcttatctatttttatttgaaaaatatgcggctcgttgaaattcatttgttacaatattatttgctgaaagtttcacaacctttgctcaaaattcacaactcagttttgttcttgagttattatttgttaaccacttgtacttgtccataaaaataacaattacttctactcaaag

upper sequence: GRMZM2G108457_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 7
GTTGGGGTGAGGTTGTCAAATGGGAAGGAGTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTGgt-aattcaaattat---cttcaattggaactttca--aaagaggaaaaaactagctctt-tctgtttcactcattgcagt---ttttaatttactt--gaatgtacag-------------
||||| |||||| | |||||||| |  ||||||||||| |||||  | ||||||||||| || |||||||| |||||||||   ||| || ||     ||  ||  ||  |||    ||      ||  |  | |||   | |||||| ||   | || |   | ||| || || |   | || | |              
GTTGGTGTGAGGCTTTCAAATGGCAGAGAGTTCTTTGCCAAAACCATAATATCAAATGCTACCAGATGGGATACATTTGgttggttccaaataagaatttttataagattttttgttaatatttcaatgataatctccgatatgtttctctgccttcattcggtcttagttaacctctaattgcataatgctacattgtag

upper sequence: GRMZM2G108457_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 7
GTTGGGGTGAGGTTGTCAAATGGGAAGGAGTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTGgt-aattcaaattatc---ttcaattggaactttca--aaagaggaaaaaactagctc--tttctgtttcactcattgca---gtttttaattta--cttgaatgtacag-------------
|| || |||||| | |||||||| |  ||||||||||| |||||  | ||||||||||| || |||||||| |||||||||   ||| || ||     ||  ||  ||  |||    ||      ||  |  | |||  | | |||||| ||   | ||   ||| |||  | |  | | | || | |              
GTAGGTGTGAGGCTTTCAAATGGCAGAGAGTTCTTTGCCAAAACTATAATATCAAATGCTACCAGATGGGATACATTTGgttggttccaaataagaaatttcataagattttttgttaatatttcaatgataatctcagtgtatgtttctctgccttcattagttcttagctaatccctaattgcataatgttacattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149086469|gb|EE176014.2|EE176014
EST:     GTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTG                         GAAAACTCTTGAAAGAAAAAGAACTTC-AGAAGAGGAGAAAAACTTTCAAA
genomic: GTTCTTTGCTAAAACGGTGATATCAAATGCCACTAGATGGGACACATTTGgtaattcaaa ... gaatgtacagGAAAACTCTTGAAAGAAAAAGAACTTCCAGAAGAGGAGAAAAACTTTCAAA