1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATCTGCATGTCCATTGCCTTTTGATGAAGCCAAACTTTGGCAAGGCGAAAATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgacatatttcctgtgttctcaacttctcatttcattagatgcattatgaaccacttgaatccttacccatgtaacattttatttattag
species | Zea mays |
transcript | GRMZM2G108115_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGGTCCTGAGCTTAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAG TGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTEST: gi|37391024|gb|CF632751.1|CF632751
genomic: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgaca ... tatttattagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
EST: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAG TGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTEST: gi|149060175|gb|EE157145.2|EE157145
genomic: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgaca ... tatttattagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
EST: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAG TGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTEST: gi|31350402|gb|CD434759.1|CD434759
genomic: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgaca ... tatttattagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
EST: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAG TGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTEST: gi|31363348|gb|CD447705.1|CD447705
genomic: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgaca ... tatttattagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
EST: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAG TGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCTEST: gi|24934189|gb|CA452407.1|CA452407
genomic: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgaca ... tatttattagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
EST: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAG TGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
genomic: AATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgaca ... tatttattagTGCAATTATGGACTGTGTTGGATGCGAGAAGTGCCGACTGTGGGGAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTGCATGTCCATTGCCTTTTGATGAAGCCAAACTTTGGCAAGGCGAAAATGGTCCTGAGCTAAAGCAAGAGATTCAGAAGCAATTTAGAAACATTAGgtttgtgacatatttcctgtgttctcaacttctcatttcattagatgcattatgaaccacttgaatccttacccatgtaacattttatttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA