1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTCCGGCCGGTTCGGTGGCGGTTTCGGCGGTTCTGGCTCGGGTGGTTTCGGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAGgtataaaattatggacgtcctgagccaggttcagcattggtaatgcacatcactctctgaccccctatccatgaccccctcag
species | Zea mays |
transcript | GRMZM2G107984_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAG AAAGTGCAGAAATCTGNGTTTTGCGGTAGCAAGAACATCEST: gi|110960396|gb|EE180448.1|EE180448
genomic: GGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAGgtataaaatt ... accccctcagAAAGTGCAGAAATCTGTGTTTTGCGGTAGCAAGAACATC
EST: GGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAG AAAGTGCAGAAATCTGTGTTTTGCGGTAGCAAGAACATCTGGAGAGACGATEST: gi|60358341|gb|DN225314.1|DN225314
genomic: GGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAGgtataaaatt ... accccctcagAAAGTGCAGAAATCTGTGTTTTGCGGTAGCAAGAACATCTGGAGAGACGAT
EST: GGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAG AAAGTGCAGAAATCTGTGTTTTGCGGTAGCAAGAACATCTGGAGAGACGAT
genomic: GGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAGgtataaaatt ... accccctcagAAAGTGCAGAAATCTGTGTTTTGCGGTAGCAAGAACATCTGGAGAGACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCGGCCGGTTCGGTGGCGGTTTCGGCGGTTCTGGCTCGGGTGGTTTCGGTGGCTTTGGCGACAAGAACTCACGGTAGACTCTTGCAAGTAATAGCAGgtataaaattatggacgtcctgagccaggttcagcattggtaatgcacatcactctctgaccccctatccatgaccccctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC