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GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacacattaacaacacctgggtgttcaaaaaagatcttgagggtttatttgatctattgatgattctaacactattagatgtttgaatggttgcctctccag
species | Zea mays |
transcript | GRMZM2G107867_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|6031419|gb|AW076321.1|AW076321
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: AGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|211186172|gb|FL452293.1|FL452293
genomic: AGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|60341419|gb|DN208392.1|DN208392
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|91872727|gb|EB402684.1|EB402684
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|6056642|gb|AW091047.1|AW091047
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: AGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|32930411|gb|CF035223.1|CF035223
genomic: AGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTAEST: gi|211210980|gb|FL114022.1|FL114022
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTA
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|211186173|gb|FL452294.1|FL452294
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|60398350|gb|DN231166.1|DN231166
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|71762342|gb|DR960279.1|DR960279
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACGEST: gi|211440538|gb|FL230375.1|FL230375
genomic: GGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
EST: GTTTAGAGCAACTAGTGGCTATCTTGGGGGCAGATTATCAAGAATCANTG GACAGGAATTTAAATCAGCTGGCGTCATCTGAAATCATCTAGTTCTGGGTAEST: gi|211208425|gb|FL114020.1|FL114020
genomic: GTTTAGAGCAACTAGTGGCTATCTTGGGG-CAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAA-TCATCTAGTTCTGG-TA
EST: TAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATG GACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
genomic: TAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacac ... gcctctccagGACAGGAATTTAAATCAGCTGGCGTCATCTGAATCATCTAGTTCTGGTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTGGCTATCTTGGGGCAGATTATCAAGAATCAATGgttagtacacattaacaacacctgggtgttcaaaaaagatcttgagggtttatttgatctattgatgattctaacactattagatgtttgaatggttgcctctccag
- - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT