1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGTGGGAGAATTTTGTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgtacaaaatagaaatatagaatcattttatagagattacacttacaggcttcagcaaatatggtagaagatagaaattcagaagtatatata...
species | Zea mays |
transcript | GRMZM2G107575_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|86466680|gb|DY233050.1|DY233050
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGATTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|76018011|gb|DT945181.1|DT945181
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|22542695|gb|BU093133.1|BU093133
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|211255132|gb|FL091665.1|FL091665
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|71320552|gb|DR797017.1|DR797017
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|78085933|gb|DV514326.1|DV514326
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACTACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGAEST: gi|4647631|gb|AI622706.1|AI622706
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|60358131|gb|DN225104.1|DN225104
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|14203857|gb|BG837534.1|BG837534
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|16918239|gb|BM073651.1|BM073651
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|149016909|gb|EE045638.2|EE045638
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCEST: gi|67010361|gb|CO439110.1|CO439110
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTC
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|60338952|gb|DN205925.1|DN205925
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|86468276|gb|DY234646.1|DY234646
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGATTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|78085932|gb|DV514325.1|DV514325
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTGGAGGAEST: gi|12972563|gb|BG268044.1|BG268044
genomic: GTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: AAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGAEST: gi|71317610|gb|DR795552.1|DR795552
genomic: AAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
EST: ATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAA GGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
genomic: ATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgt ... aataattcagGGACATAACAACAACATTCCCTAGCTTTGTGTTTAACTCGGAAGTCGACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGTGGGAGAATTTTGTCACAAGAAATCCTTCCTTGATGAAGATAATGACTCTGCCATACCTCAAgtaagaatgtacaaaatagaaatatagaatcattttatagagattacacttacaggcttcagcaaatatggtagaagatagaaattcagaagtatatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaaa