1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTTTGATGGCAACGAACAGAATAGACATTTTGGATCAAGCCCTTCTGAGGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttggctaactcatcctgttatacctgttgattttacatggctactgctgctgacagggcgcttaatcttttgcccttgcag
species | Zea mays |
transcript | GRMZM2G107362_T04 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGAT TCACGTTTCGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTEST: gi|32843443|gb|CD983124.1|CD983124
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttgg ... gcccttgcagTCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGAT TCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTEST: gi|33095260|gb|CF055254.1|CF055254
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttgg ... gcccttgcagTCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGAT TCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTEST: gi|5847445|gb|AW000524.1|AW000524
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttgg ... gcccttgcagTCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGT
EST: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGAT TCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttgg ... gcccttgcagTCACGTTTCGATATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGATGGCAACGAACAGAATAGACATTTTGGATCAAGCCCTTCTGAGGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttggctaactcatcctgttatacctgttgattttacatggctactgctgctgacagggcgcttaatcttttgcccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT