ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc...

Basic information

species	Zea mays
transcript	GRMZM2G107362_T03
intron #	7
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattcc--acttt-atctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| | ||   ||||| ||||| |  |   | |  | |    | |   | |        |   | |   |   ||   || || |       ||     
TATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGTATTGATCTGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAGCCGAGCTCAAGgtttgtttagtctttactttcatctgttataaaacattgtactgtgtatttgtctcacacgagtgattattgcgagattagtttaaatccctccgctact---

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc---
||| ||||| |||||||| |||| |||||| || ||||||||||||||| |||| ||||| || || ||||||||||| || || || ||||| || ||||| |  |   |   | | || || |    |   |    ||| || | || || ||  |  ||| |         |    |   |      || |   ||    
TATTTTGAAAATCCATTCTAGAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatactctatttgcatcatatgtttggttt--taacacctaatctaaaatt-gtattccttgttgaagcaatttgtggtggtattgctgaactcctttgctt

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccac-tttatctgatgaactgcgtgctgcctcatttcaattt-tgtgatgt-ttgctttcttgtcgttccattcaagcagaaaattatgttc
||| ||||| ||||||||||||| |||||| || |||||||||||||||||||| ||||| || || ||||||||||| || || || ||||| || ||||| | ||   |   | |  || |  |    |   |    ||| |||| || || | |    | |||      ||| ||   |||   | |     ||   || 
TATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATCTGAAGAAGATTGCCGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAGgtatatttcatttgcatccatatttttggttt--taacacctgatttaaaattgtattccatgttgaaacaatgtggtgagattgctgaactcctttgcttt-

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc
 ||||||||||| || || || |||||||| ||||||||||| || |||||||||||||| || || ||||||||||| || ||||| |||||||| |||||    |  || |  ||| |||  |    |   |  ||     | |  ||||||   | | |  | | || | | |  || |   |||            
CATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTGAAGgtaaagtgttttctatttctctact----tctatcttgttctctctacattttgcc-tctctcttatgtttttggttaatacggtcag------------

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttctt--gtcgttccattcaagcagaaaattatgttc
|||||||||||| || ||||| |||||||| ||||||||||| || |||||||||||||| || || ||||||||||| || ||||| |||||||| |||||  ||   || | || |  ||| |    |  ||  ||  ||  | |||| |     | | |  | | ||  ||  || |  |||                 
TATCTTGAAGATACACTCAAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTGAAGgtaagt--gtttctctgtccctgct----tctgtcttgt-tctctccaatctgtctctctctaatgtttttggttattacggtcag----------------

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccac-tttatctgatgaactgcgtgctgcctcatttcaatt-ttgtgat--gtttgctttcttgtcgttccattcaagcagaaaattatgttc
||| || || || || || || |||||||| ||||||||||| || |||||||| ||||| || || ||||||||||| || || || || ||||||||||| ||||    |  | ||||| |  |        |       ||||||   | || |||     |||       |  ||||  |||||   |        ||| 
TATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGTGGGATCGATCTGAAGAAGATTGCAGAGAAGATGAATGGTGCATCTGGTGCAGAGCTCAAGgtctgtttccacttcatttattttttatttcagataaaaaggcatttctcctcttatgaacaagttgtaggtaggctgttcttttcaattggt---cctcgtt-

upper sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 8
lower sequence: Vv04s0008g04690.t01 (Vitis vinifera), 5'ss of exon 8

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc--
||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||| || || ||||||||||| || || || || ||||| ||||| | |||||    | |      |   |||   | |||  |  | ||  | || || | |||| |||   |    |   ||      |   || ||  |   
TATTTTGAAAATCCACTCAAGAAAAATGAACTTAATGCGTGGGATTGATCTGAAGAAGATAGCAGAGAAGATGAATGGTGCATCTGGTGCAGAGCTTAAGgtatattaatcagtcatgcgtacagttactctat-ctgaatggtctcc-tgttttgctctttggttttgagagacttgcttatgatggtccatgattcttcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|60354034|gb|DN221007.1|DN221007

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|67018679|gb|CO447428.1|CO447428

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32843443|gb|CD983124.1|CD983124

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTCCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|166525245|gb|EG101803.1|EG101803

EST:     CTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: CTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|5607842|gb|AI901509.1|AI901509

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|16926269|gb|BM079337.1|BM079337

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|110525764|gb|EE029948.1|EE029948

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|211532760|gb|FL372716.1|FL372716

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|86470516|gb|DY236886.1|DY236886

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGTTTTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32929081|gb|CF033893.1|CF033893

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGCGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32807039|gb|CD959273.1|CD959273

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|33098406|gb|CF058366.1|CF058366

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|60398374|gb|DN231190.1|DN231190

EST:     TGAAAAAGGTCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|60354159|gb|DN221132.1|DN221132

EST:     TGAAAAAGGTCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|67016311|gb|CO445060.1|CO445060

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32796868|gb|CD949104.1|CD949104

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|6827684|gb|AW331327.1|AW331327

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCNCAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32796810|gb|CD949046.1|CD949046

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32849637|gb|CD989318.1|CD989318

EST:     TGANAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         CCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|211487780|gb|FL049401.1|FL049401

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|5706265|gb|AI942041.1|AI942041

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGTAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32846355|gb|CD986036.1|CD986036

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|60345693|gb|DN212666.1|DN212666

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|32849664|gb|CD989345.1|CD989345

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|44901517|gb|CK828062.1|CK828062

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|60350083|gb|DN217056.1|DN217056

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|211122652|gb|FL433068.1|FL433068

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|5847445|gb|AW000524.1|AW000524

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCT
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCT

EST: gi|4646865|gb|AI621940.1|AI621940

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|60355211|gb|DN222184.1|DN222184

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|21809475|gb|BQ667793.1|BQ667793

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

EST: gi|5525808|gb|AI861701.1|AI861701

EST:     TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAG                         GCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC
genomic: TGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 209

TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaat ... gttggttcagGCCGTCTGCACAGAGGCTGGAATGTTTGCTCTTCGTGAGAGAAGGGTGCACGTTACCCAGGAGGACTTCGAGATGGCAGTGGCCAAGGTGATGAAGAAAG

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 121

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 173

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 203

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCTTGAAGATCCATTCAAGAAAAATGAACTTGATGCGTGGCATTGATCTGAAAAAGATCGCGGAAAAGATGAATGGGGCCTCAGGAGCTGAGCTCAAGgtttgttaattccactttatctgatgaactgcgtgctgcctcatttcaattttgtgatgtttgctttcttgtcgttccattcaagcagaaaattatgttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaaaa