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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGAATCTGACTGGAAGCCATTGAGGCCACTAACCCCGTGGATCACTGACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaatattagttgtatttgatcttttatgtttttttaaaaactccagcttatgttttttatgaacaatgagtatatcatggacaatgtatacaagg...

Basic information

species Zea mays
transcript GRMZM2G107101_T05
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107101_T05 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g08700.3 (Oryza sativa), 5'ss of exon 7
GAAATGAATCTGACTGGAAGCCATTGAGGCCACTAACCCCGTGGATCACTGACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaatattagttgt--atttgatctt-ttatgtttttttaaaaactccagcttatgttttttatgaacaatgagtatatcatggacaatgtatacaagg
|||||||| ||||| |||||||||||||||||||| | || |||||||| ||||||||||| || |||||| |||| ||| |||||||||||||| |||||| ||| ||| ||  ||   |  |  | || || |||    | |||| ||  |       ||| ||  |||  |  |    |   |        |||  |   
GAAATGAACCTGACCGGAAGCCATTGAGGCCACTATCTCCTTGGATCACAGACATATTGCTTGCTGCACCTCTGGGTATTAGAAGTGACTATTTTAGATGgtgagtcataataaatgataacatattattgttctgtggactgaaaatctgaaatcctcctttcttgagaaatacaacctcaattttatggtgatattga---

upper sequence: GRMZM2G107101_T05 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G07240.1 (Glycine max), 5'ss of exon 6
GAAATGAATCTG-ACTGGAAGCCATTGAGGCCACTAACCCCGTGGATCACTGACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaatattagttgtatttgatcttttatgtttttttaaaaactccagcttatgttttttatgaacaatg--agta-tatcatggacaatgtatacaagg--
   ||| | | | |   ||| ||  | || ||  |  |||| ||||| ||||| ||||| | ||| |||||||| |||||| |||||||||||||||| |||| |||| | ||  || |   |      | |||| |  ||      | |  |||  | ||   ||  |  ||   |||| |   ||| ||  | ||     |   
-TGATGCAGCAGGAGAAGAAACCTATAAGACCCTTGTCCCCTTGGATTACTGATATATTACGAGCTGCACCTTTAGGCATTAGAAGTGACTATTTTCGGTGgtgagtatttttcattatgcctacaaagtcatgtatggtt-----ttgcttctttcggttcagatagatgatattagtaatgctatgtacgttttagttctgcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057921|gb|BM736588.1|BM736588
EST:     GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG                         GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
genomic: GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaata ... catatatcagGTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: gi|89106449|gb|DY576666.1|DY576666
EST:     GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG                         GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
genomic: GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaata ... catatatcagGTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: gi|18963999|gb|BM660750.1|BM660750
EST:     GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG                         GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
genomic: GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaata ... catatatcagGTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
EST: gi|18963998|gb|BM660749.1|BM660749
EST:     GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATG                         GTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC
genomic: GACATATTGCTAGCCGCACCTTTGGGCATTCGAAGTGACTATTTTCGATGgtaagtaata ... catatatcagGTGTGGCGGTGTAATGGGAAAATATGCTGCTGGTGGAGAGTTGAAGCCTCC