1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCAGTTCAAAAAATACTCAAAGAAGCAGGAATTAGAGTTAAAGTGGACGACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgtttctactcttatagtggaagactcagagctgcgaacttctgtgtgttgttcacccatttgctcttagcatatttggtttcatatgctttcag...
species | Zea mays |
transcript | GRMZM2G107089_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|32833724|gb|CD973402.1|CD973402
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|32834986|gb|CD974664.1|CD974664
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|32833500|gb|CD973178.1|CD973178
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|60397373|gb|DN230189.1|DN230189
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|83279137|gb|DV943145.1|DV943145
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|32835396|gb|CD975074.1|CD975074
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|148954704|gb|EC900156.2|EC900156
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|33091118|gb|CF051112.1|CF051112
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCGCTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGTEST: gi|149110508|gb|EE190454.2|EE190454
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
EST: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAA GGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
genomic: ACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgttt ... cttttgacagGGGGTTCCTGTAAGAATAGAGATAGGTCCACGTGATGTCACAAATAAGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGTTCAAAAAATACTCAAAGAAGCAGGAATTAGAGTTAAAGTGGACGACTCAGAGCTGCGAACTCCTGGATGGAAATTCAATCACTATGAGATGAAAgtaattgtttctactcttatagtggaagactcagagctgcgaacttctgtgtgttgttcacccatttgctcttagcatatttggtttcatatgctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG