Sequence
atgc intronic sequence ATGC exonic sequenceGGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtgccttttcatctttgttcttcacaactttgtaatgatttcttgcactggaacaactgcttagataattcaaacattacatgtcagcctctccttactattgatatcatattttgtatcacaatacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 7
GGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtgccttttcatctttgttcttcacaactttgtaatgatttcttgcactggaacaactgcttagataattcaaacattacatgtcagcctctccttactattgatatcatattttgtatcacaatacttcag
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GGTACAACTTTTGTTGCGCTCTATGGCCTTGGAAACATTAGAGATGAACGATTAAACAGGATGTTTCAGgtgcatttccattgacttttctaagaa-tttgaagttaattcgcaacttggcagcacta---gagcaag--aaactttcttgatca------tttgaacattgatatcatatttt-tatatcaattattcag
upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 2
----------------------GGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtgccttttcatctttgttcttcacaactttgtaatgatttcttgcactggaacaactgcttagataattcaaacattacatgtcagcctctccttactattgatatcatattttgtatcacaatacttcag
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GCTGTATTTTTATGAATTGCAGGGTTCAACATCTGTAGCTCTGTATGGTCTGGGAAACATTAGAGATGAAAGGCTTAATAGGATGTTTCAAgta---tgccactgataaaatttgctttcatgcagttcatctatttaactgctctcccatctggttg--tgatatattatttatttatatttattttcag--------------------------------
upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 7
GGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtg--ccttttcatctttgttcttcacaactttgtaatgatttcttgcactggaaca-actgcttagataattcaaacattacatgtcagcctctccttactattgatatcatattttgtatcacaatacttcag
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GGCTCAACAACCGTGGCTCTCTATGGTTTAGGAAACATCAGGGATGAACGTCTCAATAGAATGTTTCAGgtaatccagaggaccctcaccttttgcta---tacaattgttaattgtgttaatatttattggtttcacag----------------------------------------------------------------
upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 7
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 6
GGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtgccttttcatctttgttct-tcacaactttgtaatgatttcttg-cactggaacaactgcttagataattcaaacattacatgtcagcctctccttactattgatatcatattttgtatcacaatacttcag
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GGTTCAACGCTTGTGGCTCTCTATGGTCTTGGGAATATTCGAGATGAACGCCTCAATAGGATGTTTCAGgta---atttatgttggaacagttgcatttcagtggtcaacctttgacaccatggta----ctcacatgtttgttgggtt---tgtctttttaatcttag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|91052429|gb|EB162847.1|EB162847EST: TGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAG ACGCCTCATTCAGTACAGTGGATGCGACCTGNAACTCAAGATGGGGAGTCA
genomic: TGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtgccttttc ... aatacttcagACGCCTCATTCAGTACAGTGGATGCGACCTGGAACTCAAGATGGGGAGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGACTAAATAGAATGTTTCAGgtgccttttcatctttgttcttcacaactttgtaatgatttcttgcactggaacaactgcttagataattcaaacattacatgtcagcctctccttactattgatatcatattttgtatcacaatacttcag
- - - - - - - - - - - - - - - - - - - - GAGATG