1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCGAGTATCCAGCCAGTCAATCCTGTCCAGGCTGCACAAGCAGCTCAAACTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccctctgtgcatgcagactgacatttttgcaactagttgactttggatctcatattcgtcattgtctgaactgtag
species | Zea mays |
transcript | GRMZM2G105772_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GACCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|31364335|gb|CD448690.1|CD448690
genomic: GACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTCCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|148969759|gb|EE020640.2|EE020640
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: CTGCAGCTCCATCTGGACCCAATGCTACCCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAATCTTTGATGTTTTEST: gi|91876142|gb|EB406099.1|EB406099
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTT-GATGTTTT
EST: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|78023202|gb|DV491589.1|DV491589
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: TGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|78118533|gb|DV536917.1|DV536917
genomic: TGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: TGCAGCTCCATCTGGGAC-AAATGCTAACCCTCTAGACCTCTTTCCCCA- TCTCTTCCGAAATGCTTCCGCCA-TGCTGGCACAGGAAACCEST: gi|76011554|gb|DT938724.1|DT938724
genomic: TGCAGCTCCATCTGG-ACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAA-TGCTTCCGCCAATGCTGGCACAGGAAACC
EST: TGCAGCTCCATCT-GACCCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|149099558|gb|EE185596.2|EE185596
genomic: TGCAGCTCCATCTGGA-CCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|31363913|gb|CD448268.1|CD448268
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTCCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGEST: gi|148956696|gb|EC902566.2|EC902566
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
EST: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAEST: gi|91054259|gb|EB164677.1|EB164677
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACA
EST: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAA TCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
genomic: CTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccc ... tgaactgtagTCTCTTCCGAATGCTTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCGAGTATCCAGCCAGTCAATCCTGTCCAGGCTGCACAAGCAGCTCAAACTGCAGCTCCATCTGGACCAAATGCTAACCCTCTAGACCTCTTTCCCCAAgtaactcccctctgtgcatgcagactgacatttttgcaactagttgactttggatctcatattcgtcattgtctgaactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC