1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttttctgcccagttcctgtgaaatactgtacatcatatgtctttcttcactacggttcaaaccttctaacttatatttctcctcctaaag
species | Zea mays |
transcript | GRMZM2G105539_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA GCGAACAAATTAGAGCAACCCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|148958813|gb|EC905077.2|EC905077
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGEST: gi|5846791|gb|AI999874.1|AI999874
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAG
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGGAGGATGCA GCGAACCAAATTAGAGCAACTCAGNAGAAAGGATGGTCAAAGTAAGAGAGCEST: gi|6973389|gb|AW438083.1|AW438083
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAAC-AAATTAGAGCAACTCAG-AGAAAGGATGGTCAAAGTAAGAGAGC
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGCCCAACAGGAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|6031284|gb|AW076291.1|AW076291
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGGAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|5296253|gb|AI782933.1|AI782933
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGGAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|211363054|gb|FL031142.1|FL031142
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|18385084|gb|BM418283.1|BM418283
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|87152689|gb|DY397478.1|DY397478
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTTEST: gi|22489513|gb|BU049436.1|BU049436
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
EST: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCA GCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
genomic: CATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttt ... cctcctaaagGCGAACAAATTAGAGCAACTCAGAGAAAGGATGGTCAAAGTAAGAGAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGGAGTAAGATTGCTTCTGCAACATCAGCTATTAAATCAGTATTTGGACAAGAGGTCCAACAGCAGGATGCAgtaggtgttttctgcccagttcctgtgaaatactgtacatcatatgtctttcttcactacggttcaaaccttctaacttatatttctcctcctaaag
- - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG