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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccgcttaattcatttgctgttttcttactacacatgctctagcatattttggatgatcacattcacgcaggtaggcatatgcttccttagcgatatctctcag

Basic information

species Zea mays
transcript GRMZM2G104918_T03
intron # 7
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104918_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g59040.1 (Oryza sativa), 5'ss of exon 7
ATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccgcttaattcatttgctgttttcttactacacatgctctagcatattttggatgatcacattcacgcaggtaggcatatgcttccttagcgatat-ctctcag
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| |||||||||    || | | |||  || |||   | | || || |  ||       | | ||  |     ||| |||   |    |     |||||| | ||||  | | ||
ATAGCAGTATGTGCTGATGATCCTGAATACCGTCATTACAATGACATCAGTGAGCTGTCTCCTCACCGCCTCCAAGAGATTAAACGCTTCTTTGAAGACTgtatcctca---tagtccgttttatggtttaa-attgcatatcccata-------tagtatagtattggtcatgcatacatctgttattgtccttaacaatatgtttttag

upper sequence: GRMZM2G104918_T03 (Zea mays), 5'ss of exon 7
lower sequence: EDP02064 (Chlamydomonas reinhardtii), 5'ss of exon 3
--------------ATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTT-------GAAGATTgt-atcctccgcttaattcatttgctgttttcttactacacatgctctagcatattt-tggatgatcacattcacgcaggtaggcatatgcttccttagcgatatctctcag-----------------------
              || || ||    || || || || || |||     || || |||||||||| ||||| ||||||||||||||   ||||||||||| | | |        ||| |  |  | |||| |   ||    |  | |  |  |       |   |    | |  |    | ||  | ||     |     |  | |  | | | |   | |||   ||  |                         
GCGACGACAAGCTGATTGCCGTTCACGCCGACGACCCGGAGTACAAGGGCTTCACCGACATCAGCCAGCTGCCTCCTCACCGCCTGGCCGAGATCAAGCGgtgcgtacgtgcgggaaaacagggagcctcagggaaaggtgtgggatagtgccaagtcggatgaggcgcaactcagcagtagagcagcaagccgagatgtgctgac-cacg-tccaccaacgagtgctgacgcggcttcgtctgaccgtgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62550351|gb|DN830771.1|DN830771
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAAC
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAAC
EST: gi|5847381|gb|AW000460.1|AW000460
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|32919721|gb|CF024533.1|CF024533
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|37386984|gb|CF630684.1|CF630684
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCTCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|5525746|gb|AI861639.1|AI861639
EST:     TCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: TCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|37379871|gb|CF626703.1|CF626703
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211101358|gb|FK999222.1|FK999222
EST:     GAGCTGTCTCCTCACCGCCTGNCA-GAGATCAAGCGCTTCTTTGAAGATT                         T
genomic: GAGCTGTCTCCTCACCGCCTG-CAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcag-
EST: gi|211101358|gb|FK999222.1|FK999222
EST:     GAGCTGTCTCCTCACCGCCTGNCA-GAGATCAAGCGCTTCTTTGAAGATT                         T
genomic: GAGCTGTCTCCTCACCGCCTG-CAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcag-
EST: gi|67017181|gb|CO445930.1|CO445930
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211500492|gb|FL437349.1|FL437349
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|89106071|gb|DY576288.1|DY576288
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211096403|gb|FK999193.1|FK999193
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|60393934|gb|DN226804.1|DN226804
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|67033584|gb|CO462333.1|CO462333
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|113703472|gb|EE680976.1|EE680976
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|67021936|gb|CO450685.1|CO450685
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|37386449|gb|CF630410.1|CF630410
EST:     GCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: GCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|7031378|gb|AW461161.1|AW461161
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211098872|gb|FK999201.1|FK999201
EST:     GAGCTGGCTCCTCAC-GCCTGGCA-GAGATCAAGCGCTTCTTTGAAGATT                         TCAAGAAAA-CGAGGACAAAGAAGTCGCAGT
genomic: GAGCTGTCTCCTCACCGCCTG-CAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGT
EST: gi|16926747|gb|BM079815.1|BM079815
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|18162979|gb|BM332818.1|BM332818
EST:     CCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211096392|gb|FK999182.1|FK999182
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|213173898|gb|FM195700.1|FM195700
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|18177661|gb|BM378871.1|BM378871
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|74034986|gb|DT535476.1|DT535476
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACG
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACG
EST: gi|4314542|gb|AI461596.1|AI461596
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|18177016|gb|BM378226.1|BM378226
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|116816200|gb|EC858919.1|EC858919
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATC-AGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|71442868|gb|DR823918.1|DR823918
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211093923|gb|FK999176.1|FK999176
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|37377641|gb|CF625441.1|CF625441
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|51592318|gb|CV071464.1|CV071464
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACGAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|32912207|gb|CF017019.1|CF017019
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTG
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTG
EST: gi|71439485|gb|DR820535.1|DR820535
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|60336871|gb|DN203844.1|DN203844
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|18168666|gb|BM338506.1|BM338506
EST:     GCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: GCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|60359049|gb|DN226022.1|DN226022
EST:     CGAGCTGTTTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTTTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|211091453|gb|FK999156.1|FK999156
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGANAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|31351589|gb|CD435946.1|CD435946
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|17930140|gb|BM267100.1|BM267100
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|31350632|gb|CD434989.1|CD434989
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGGTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|67023516|gb|CO452265.1|CO452265
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|16916399|gb|BM072828.1|BM072828
EST:     CGAGCTGTCTCCTCTCCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
EST: gi|24765735|gb|CA400894.1|CA400894
EST:     CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATT                         ACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA
genomic: CGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccg ... tatctctcagACAAGAAAAACGAGAACAAAGAAGTCGCAGTTGATGCATTCTTGCCCGCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGCAGTATGTGCTGATGATCCTGAATACCGTCACTACAACGACATCAGCGAGCTGTCTCCTCACCGCCTGCAAGAGATCAAGCGCTTCTTTGAAGATTgtatcctccgcttaattcatttgctgttttcttactacacatgctctagcatattttggatgatcacattcacgcaggtaggcatatgcttccttagcgatatctctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA