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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGTGACATTTCAGGAATTGGATCCTGGGACTGGAATATGAGTGGACAACAATCTACTTACCATGCCCTTTACCCTAGGGCTTGGACAGTATATGATGgtattgaaagtaactacagaattctcttttggttaacatctacctttgtctcattttggattgtgcttgttag

Basic information

species Zea mays
transcript GRMZM2G104833_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104833_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g13810.1 (Oryza sativa), 5'ss of exon 8
GGAAGTGACATTTCAGGAATTGGATCCTGGGACTGGAATATGAGTGGACAACAATCTACTTACCATGCCCTTTACCCTAGGGCTTGGACAGTATATGATGgtattg------aaagtaactacagaattctcttttggttaacatcta--cctttgtctcattttggattgtgcttgttag
|||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| || |||||||||||| | |||||  ||||  |||||||||       || |||| | ||  ||  |||       ||  |||  | ||| ||| || ||||||| ||||| ||||
GGAAGTAACATTTCAGGAATTGGATCCTGGGACTGGAATATGAGTGGACAAAACTCTACGTACCACGCTCTTTACCCTAGGTCCTGGACGATATACAATGgtattgctgtaacaaataacaatagggtttacttccaagcgactactattcttttttctaatgttggattttgcttattag

upper sequence: GRMZM2G104833_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT1G33700.1 (Arabidopsis thaliana), 5'ss of exon 8
GGAAGTGACATTTCAGGAATTGGATCCTGGGACTGGAATATGAGTGGACAACAATCTACTTACCATGCCCTTTACCCTAGGGCTTGGACAGTATATGATGgtat-----------tgaaagtaactacaga-attctcttttggttaacatctacctttgtctcattttggattgtgcttgttag----------------------
  |  |   | |   |||||||  || ||||||||||| ||||  ||  || |||||||||||||||| ||||| || ||| ||||||| || |||||||||||           | || ||  |||   |  ||  ||   | ||||  |    |   ||||   | |  |||  | || | |                       
CAAGCTCCAAATATGGGAATTGAGTCTTGGGACTGGAACATGACAGGGGAAAAATCTACTTACCATGCTCTTTATCCGAGGTCTTGGACCGTCTATGATGgtataatattcgacctaaatgtctctaatcatgtttactacagattaatttactgcaaagtcttgatgtatattaaggttatgaaaatgtttttacttgatgaacag