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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTCATGTTTGGCGGGGAACGTCTCCTCAACATCCATGGCGCGGACTCCAAACCCGTTGTCAATACGCTCATATTCAACTCCTTCGTGTTCTGCCAGgtgggtctgcatccaccgttgccaacatattcattcacttatgtgacgcgcctagtgctgggaatctgggccgggcttttcgggccagcacgagcacggc...

Basic information

species Zea mays
transcript GRMZM2G104730_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 6
AGCTCTCATGTTTGGCGGGGAACGTCTCCTCAACATCCATGGCGCGGACTCCAAACCCGTTGTCAATACGCTCATATTCAACTCCTTCGTGTTCTGCCAGgtgggtctgc-atccaccgttgccaacatatt--cattcacttatgtgacgcgcctagtgctgggaatctgggccgggcttttcgggccagcacgagcacggc
||||||||||||||| |||||| | || || |||||| | || || || |||||| || |  | ||||| || |||||||||||||||||||| || |||||  ||     ||  | |  ||  | | |  |   |||  |  |    || | | ||       |  |||     || | ||  |  | |    ||    |  
AGCTCTCATGTTTGGTGGGGAAAGGCTTCTGAACATCAAGGGTGCAGATTCCAAATCCATCATAAATACACTGATATTCAACTCCTTCGTGTTTTGTCAGgttagtgcattatggaacactgtaaccgtgctagtatttccacaaaccactcacataaaatgatgtttcttttttgg-ccttaagacctatggtgaaactg--