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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAGCGAAGTTTTTGTTCACCAGCTGATTCACACGATCGAATTTGTTCTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttacttcaagcattatgtctttatttacacagcctcacctacacaacatcccatacttcctaagggcttgtgtggctgcaccctaatccacatggatagattggagtgcagccaaacaagttttttttataacttcaatggctactaacgagctactgatattctcccttcag

Basic information

species Zea mays
transcript GRMZM2G104418_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104418_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 16
AGTTCAGCGAAGTTTTTGTTCACCAGCTGATTCACACGATCGAATTTGTTCTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgtta--cttcaagcattatgtcttta-tttacacagcctcacctacacaacatcccatacttcctaagggcttgtgtggctgcaccctaatccacatggatagattggagtgcagccaaacaagttttttttataacttcaatggctactaacgagctactgatattctcccttcag
||||||| |||||||||||||||||| |||| ||||| || || ||||||||||| ||||||||||| ||||| || || ||||| || |||||||| ||||| |  ||  | |  ||||| |   | ||| |||  ||||||| ||   | || |||||||   ||  |         ||   || |    ||  |   |   || ||||  | || |          || ||| || |                                          
AGTTCAGTGAAGTTTTTGTTCACCAGTTGATCCACACAATTGAGTTTGTTCTTGGGGCAGTCTCAAATACAGCCTCATATCTTCGTCTCTGGGCTCTCAGgtacttctagacattcagcatcaccgcattactttgaacagccttactccctcatcatcccacttttgatctataacaatgca-ctccttgttagccactaataatcgattaaattgta----------ttctttatacag-----------------------------------------

upper sequence: GRMZM2G104418_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G12120.1 (Glycine max), 5'ss of exon 16
AGTTCAGCGAAGTTTTTGTTCACCAGCTGATTCACACGATCGAATTTGTTCTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttacttcaagcattatgtctt-tatttacacagcctcacctacacaacatcccatacttcctaagggcttgtgtggctgcaccctaatccacatggatagattggagtgcagccaaacaagttttttttataacttcaatggctactaacgagctactgatattctcccttcag--------
||||||||||||| ||||| || || || || || || || |||||||| ||||| |||||||| || |||||||| ||||| || || ||||| || ||||| |||  ||  |||    |    || ||||   | ||     | |      ||    | ||    |  |  | |       ||||   || | |   || |||  |    ||  |   | | | ||||  |  ||   || ||| |||    || |  ||||||| || ||| ||           
AGTTCAGCGAAGTCTTTGTACATCAACTCATACATACCATAGAATTTGTACTTGGAGCAGTCTCTAATACAGCTTCTTACCTCCGTCTATGGGCCCTTAGgta-tgt--ctataagtcccaaacgttctattctaatagtaatgcttgagtcccactagaaacaaggttggaacctcacatcatgcagtttattacttttgtatatctattcgtcta--tagatatgtttgatgcatgtattgaattgctttgcac-atttactgatgttttccttttctgtacccag

upper sequence: GRMZM2G104418_T02 (Zea mays), 5'ss of exon 7
lower sequence: AT4G39080.1 (Arabidopsis thaliana), 5'ss of exon 16
AGTTCAGCGAAGTTTTTGTTCACCAGCTGATTCACACGATCGAATTTGTTCTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttacttcaagcattatgtctttatttacacagcctcacctacacaacatcccatacttcctaagggcttgtgtggctgcaccctaatccacatggatagattggagtgcagccaaacaagttttttttataacttcaatggctactaacgagctactgatattctcccttcag
| ||||||||  | ||||| || |||||||||||||| || || ||||| ||||| || || || ||||| ||||| ||||| || || |||||||| |||||    || |  ||||  ||  |    | ||||| | ||| |    |    | |   || | | ||   |  |                                                                                                         
AATTCAGCGAGATATTTGTGCATCAGCTGATTCACACCATAGAGTTTGTGCTTGGAGCTGTTTCCAACACCGCTTCTTACCTGCGTCTATGGGCTCTCAGgtatgagtagtagaagctatacatg---aattacataacct-atactcgtggcttaatatccattcttttgtttcag------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91050181|gb|EB160599.1|EB160599
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTTTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|71307229|gb|DR789781.1|DR789781
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76012012|gb|DT939182.1|DT939182
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|5922431|gb|AW055720.1|AW055720
EST:     TTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTGCTGAT
genomic: TTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|32807350|gb|CD959584.1|CD959584
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAGGTACTATTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|78123325|gb|DV541709.1|DV541709
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|60347811|gb|DN214784.1|DN214784
EST:     CAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|31361649|gb|CD446006.1|CD446006
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|67015522|gb|CO444271.1|CO444271
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGGCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|67025519|gb|CO454268.1|CO454268
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGGCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76292035|gb|DV031603.1|DV031603
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211366578|gb|FK956887.1|FK956887
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76283841|gb|DV023409.1|DV023409
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|94475015|gb|EB703973.1|EB703973
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTGTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211366579|gb|FK956888.1|FK956888
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTAGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTC
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTC
EST: gi|94480097|gb|EB709055.1|EB709055
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTGTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTTTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|91050182|gb|EB160600.1|EB160600
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|76283840|gb|DV023408.1|DV023408
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|78123326|gb|DV541710.1|DV541710
EST:     CTTGGTGCAGTCTCAAACACAGCTTCACACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGAACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211181861|gb|FL474507.1|FL474507
EST:     ACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: ACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|32809734|gb|CD961968.1|CD961968
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTGAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
EST: gi|211149407|gb|FL321987.1|FL321987
EST:     CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAG                         TCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT
genomic: CTTGGTGCAGTCTCAAACACAGCTTCGTACCTTCGCCTTTGGGCTCTGAGgtagtgttac ... ctcccttcagTCTTGCACACTCCGAGTTGTCCACTGTATTCTACGATAAAGTACTACTCAT