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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAAACGGTGTAAACTCTCAGGAAATATATTCAATATTCTTTTCAATCTGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataacccttaatatatttcaaatttgctgccaagtattaagttaaataatccgataatgtttaattgtag

Basic information

species Zea mays
transcript GRMZM2G104254_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0036g00750.t01 (Vitis vinifera), 5'ss of exon 8
CTTAAAACGGTGTAAACTCTCAGGAAATATATTCAATATTCTTTTCAATCTGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataacccttaatatatttcaaatttgctgccaagt---attaagttaaataatccgataatg-tttaattgtag------
||| ||| | |||||||| || |||| | | |||||||| |||||||| || || ||||| ||||| |||||||||||||||||||| |||||||| ||||| | |  ||   || |    | | |  |||  ||    ||   || | |   || ||  |  | ||| ||| ||  ||       
CTTGAAAGGTTGTAAACTTTCTGGAAGTGTCTTCAATATCCTTTTCAACCTTAATAAGTTTATGGCTTTTGAAACTCGTGATCCATTTCTCATTCGTCAGgtaaatcaaatagtttactcttgttagtttttatgtattgtttcatcatgcataacaactccctgatgcttttatgatatgaccag

upper sequence: GRMZM2G104254_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S34_411V6.1 (Physcomitrella patens), 5'ss of exon 11
CTTAAAACGGTGTAAACTCTCAGGAAATATATTCAATATTCTTTTCAATCTGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataacccttaatatatttcaaatttgctgccaagtattaagttaaataatccgataatgtttaatt-gtag---------------------------
| | || ||||||||| | || || ||| | ||||||||||| ||||| |||||||||||| | |||||||| |||||||| || || |||||||| ||||| |||| |   ||    ||||   |||  ||      | |  | ||||    |    |  | |||  | ||  |                             
CCTGAAGCGGTGTAAATTATCTGGGAATTTTTTCAATATTCTCTTCAACCTGAACAAGTTCGTAGCATTTGAGACTCGTGACCCTTTTCTCATTCGTCAGgt-attacattactc---atatcgaaaacctggatttcaattcttagttggtcataaagcgagtgtccagttcattattcacaattatgaactaaatcttattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211505068|gb|FK974736.1|FK974736
EST:     TGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAG                         GAACGTGAAAATCCAACGCTGACTGAGTGGGATCGGTTTGCGCATAGAGAA
genomic: TGAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataa ... ttaattgtagGAACGTGAAAATCCAACGCTGACTGAGTGGGATCGGTTTGCGCATAGAGAA