Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaagctaagaaattcacttgcttggtgtttg...

Basic information

species Zea mays
transcript GRMZM2G104147_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104147_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 7
GCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaa-cccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaagctaagaa--attcacttgcttggtgtt-tg--
||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| ||||||| |   || ||| |||| ||| ||  | |     ||    || |  | | ||   || |||||| | ||||||| |||  |||   ||  ||||  |  ||  
GCATTGGACACCTTTAATACAGCAGTTGTCTCACCAATATATTACGTGATGTTTACTTCACTAACAATTTTAGCCAGTGTGATAATGTTTAAGgtaagctttttctatcacttccattaggcatt-----cagcccttatacactcaac-tttcttgttgcagaaagctatgaacaatttttttttttggcttaatgtg

upper sequence: GRMZM2G104147_T03 (Zea mays), 5'ss of exon 7
lower sequence: AT1G71900.1 (Arabidopsis thaliana), 5'ss of exon 7
GCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaa-gctaagaaattcacttgcttggtgtttg------
|| || |||||||| ||||||||  |||| || || ||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| |||||| ||        | ||  ||     || | |    || ||| |||   |||  |  || | |   |       ||    |||||  |  |||  ||||       
GCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGgtatcct------ctgctcccaca---aaatgt----atctatggttgtatgagggtgttgtttcagactttcagtacatgattcaaatcgttgtggttttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108967|gb|DV527384.1|DV527384
EST:     ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAG                         GATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC
genomic: ACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccatt ... tgatgtgcagGATTGGGACCATCAAAATCCAACACAAATTGTTACAGAGATGTGTGGCTTC