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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggaccaaatgtggtgctccctctcatacccttaggttttgtataaaaaagatcttttaggatgaaaataatgcactactatgccatttgggagacatttccattttggctggtaaaggtataattcggctgcaaactgttgttttag

Basic information

species Zea mays
transcript GRMZM2G103897_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G103897_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g45100.1 (Oryza sativa), 5'ss of exon 7
GGTTTTATTTGAGTTGATATGGAGAGACTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggaccaaatgtggtgctccctctcatacccttaggttttgtataaaaaagatcttttaggatgaaaataatgcactactatgccatttgggag-acatttccattttggctgg-taaaggtataat--------tcggctgcaaactgttgttttag-----------------
||||||||||||||||||||||||||| |||||| | ||  |||||||||||||||| ||| |||| |||||||| ||||| ||     | |    ||| |||||||  || ||| |  || || |||||||  | | |   ||||| | |     || | |      ||  |  |||     ||||  |||   || | ||| |||        | ||||| |||  | | |  |                   
GGTTTTATTTGAGTTGATATGGAGAGATTACTTCCGGTTCATATCAGCAAAATATGGGAACTCCATTTTTCACCTAGgtaaaga-----tataactctctctctcatgtccctagataatgcatgaaaaagaagtatcactctgaaattcactt-ttattgtttatcctgaaaatacacagttatttcagctaaatatatgtagaatagttagatttggctggaaaaaggtataatcctctttaaactactgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76283830|gb|DV023398.1|DV023398
EST:     CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG                         GAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
genomic: CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggacca ... gttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
EST: gi|110957435|gb|EE177487.1|EE177487
EST:     CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG                         GAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
genomic: CTACTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggacca ... gttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
EST: gi|13149731|gb|BG320053.1|BG320053
EST:     CTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGG                         GAGGCCCGAGGAAAKTAKTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG
genomic: CTTCAGATTTCTATCAGCAAAATATGGAAACGCCATATTTCACCTGGgtaaggacca ... gttgttttagGAGGCCCGAGGAAAGTAGTATCGAAGTGGAGTCAGGACCAAGCACTGTTTG