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TAAGAATAAAGCCCTTGCCTGCTGGGGAAGCAAATAGCAAAACACCAATTCCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAGgtgaaattgaaagcacatgcatttttcttggttccggtcactgacagagattaccttaaaagatatcctgtgtctgttcaatagtttagtgattgttcattaagagtttatctgattttatctggtttatcttaacag
species | Zea mays |
transcript | GRMZM2G100707_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAAG GA-TTCTTTCAAGTTGGACTCATATTTGGATCCTGCTTTTATGTCTATAAEST: gi|148965131|gb|EE015945.2|EE015945
genomic: CTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAA-Ggtgaaattga ... atcttaacagGAATTCTTTCAAGTTGGACTCATATTTGGATCCTGCTTTTATGTCTATAA
EST: CCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAG GAATTCTTTNCA-GTTGGACTCATATTTGGATCCTGCEST: gi|60342456|gb|DN209429.1|DN209429
genomic: CCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAGgtgaaattga ... atcttaacagGAATTCTTT-CAAGTTGGACTCATATTTGGATCCTGC
EST: CCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAG GAATTCTTTCAAGTTGGACTCATATTTGGATCCTGCTTTTATGTCTATAEST: gi|149110834|gb|EE294332.2|EE294332
genomic: CCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAGgtgaaattga ... atcttaacagGAATTCTTTCAAGTTGGACTCATATTTGGATCCTGCTTTTATGTCTATA
EST: CCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAG GAAATTCTTTCA-GTTGGACTCATATTTGGATCCTGCTTTTATGTCTATAA
genomic: CCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAGgtgaaattga ... atcttaacagGAA-TTCTTTCAAGTTGGACTCATATTTGGATCCTGCTTTTATGTCTATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGAATAAAGCCCTTGCCTGCTGGGGAAGCAAATAGCAAAACACCAATTCCTACACTTGCAGATATCCCGCTTCCTGATTCGAGTTTGACACGTAGAAGgtgaaattgaaagcacatgcatttttcttggttccggtcactgacagagattaccttaaaagatatcctgtgtctgttcaatagtttagtgattgttcattaagagtttatctgattttatctggtttatcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT