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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagcccttatatgtccctggtattttgattgctacggattgtggtatgtacaagcttgatgctggatcgtagattcattactttgcag

Basic information

species Zea mays
transcript GRMZM2G100652_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G100652_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 8
GAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagcccttatatgtccctggtattttgattgctacggattgtggtatgtacaa-gcttgatgctggatcgtagattcatta-ctttgcag---------
 || |||||||||||||| || ||| || | |||||||| || || ||||||||||||||||| || |||||||||||| |||| | |   |||   |  | | |   ||  ||   ||  ||   || |||  ||  | |  |       | ||| | || |||  ||          
TAACGGTGAACCAGAAAAACCGCTTATACTGTATGTTGGTCGTTTGGGAGTTGAGAAAAGCTTAGACTTTCTTAAGAGgtgagctcatgc-tgtgaattttgtctgattttttaaaaatgctgcagtgcacactgcgaggtatttttggaaatatttactaacttctcatggcccaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71425523|gb|DR806728.1|DR806728
EST:     TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG                         AGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
genomic: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagccctt ... tactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
EST: gi|211491629|gb|FL429938.1|FL429938
EST:     TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG                         AGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
genomic: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagccctt ... tactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
EST: gi|211368674|gb|FL393824.1|FL393824
EST:     TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAG                         AGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC
genomic: TTTTATGTTGGACGCTTAGGAGTTGAGAAAAGCTTGGATTTTCTTAAGAGgcgagccctt ... tactttgcagAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTTATTGGAGACGGACC