1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGAGCTGTCATGAACATTGCCCCTTTGGCTATCTCAACAACTGGCAGGGGTTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTGgtaaattacacaactctacttagtgcattggtattcatattcctgtaaaagcctcatggcgagtttttgttcag
species | Zea mays |
transcript | GRMZM2G100639_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTG GGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTGEST: gi|60341724|gb|DN208697.1|DN208697
genomic: TTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTGgtaaattaca ... ttttgttcagGGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTG
EST: CTGATC-AGAGACTG GGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTGEST: gi|32933866|gb|CF038678.1|CF038678
genomic: CTGATCAAGAGACTGgtaaattaca ... ttttgttcagGGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTG
EST: TTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTG GGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTGEST: gi|9566453|gb|BE475962.1|BE475962
genomic: TTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTGgtaaattaca ... ttttgttcagGGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTG
EST: TTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTG GGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTG
genomic: TTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTGgtaaattaca ... ttttgttcagGGGAGCGAAGGCTTGAAGCTGGTGCCATGGTTCTTGCTGATCGTGGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCTGTCATGAACATTGCCCCTTTGGCTATCTCAACAACTGGCAGGGGTTCATCTGGTGTTGGTTTGACTGCTGCTGTGACTTCTGATCAAGAGACTGgtaaattacacaactctacttagtgcattggtattcatattcctgtaaaagcctcatggcgagtttttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA