1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCCACATCCTCACAGCAAGTGGTGCATACAAGCACACAGCACTTGTCACCCAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagacttccctatttatcattgactaattttaacatccatgttttacatttttcatgtaactttccactctcttag
species | Zea mays |
transcript | GRMZM2G100484_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGATCAACTGTCGAACAGACCGTGCCAATCTCATATCTTCATCACAATG AATA-GCATTCCATACCCTTTACAATGGGGTGCACCAAEST: gi|22545627|gb|BU097986.1|BU097986
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAA
EST: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATG GATAAGCATTCCATACCCTTTACAAATGNGGTGCACCAACATTCAGTGCAGEST: gi|26457048|gb|CA828631.1|CA828631
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTAC-AATGGGGTGCACCAACATTCAGTGCAG
EST: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATG GATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGAEST: gi|20811192|gb|BQ295670.1|BQ295670
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCAGTGCAGA
EST: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATG GATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCA
genomic: CAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagac ... actctcttagGATAAGCATTCCATACCCTTTACAATGGGGTGCACCAACATTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCACATCCTCACAGCAAGTGGTGCATACAAGCACACAGCACTTGTCACCCAGATCAACTGTCGGACAGACCGTGCCAATCTCATATCTTCATCACAATGgtttggagacttccctatttatcattgactaattttaacatccatgttttacatttttcatgtaactttccactctcttag
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