1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTGGTGACTTTGGTCTTGCAAAATGGAAGGCTGGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGGgtctggataaacttcacctgacagagctatcggctaattcttccattctatgttatccgtttttttataatgagtgattttctgtcatgtccaacag
species | Zea mays |
transcript | GRMZM2G100454_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGGCTGGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGG ATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGAEST: gi|32930838|gb|CF035650.1|CF035650
genomic: TGGAAGGCTGGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGGgtctggataa ... tgtccaacagATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGA
EST: GGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGG ATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGAEST: gi|42491831|gb|CK700877.1|CK700877
genomic: GGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGGgtctggataa ... tgtccaacagATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGA
EST: ACAAGGATTCTGGGTCAAACAGG ATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGAEST: gi|40287084|gb|CK327476.1|CK327476
genomic: ACAAGGATTCTGGGTCAAACAGGgtctggataa ... tgtccaacagATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGA
EST: TGGAAGGCTGGCGATGACAACATCCAGACAAGGATTCTGGGTCAAACAGG ATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGA
genomic: TGGAAGGCTGGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGGgtctggataa ... tgtccaacagATACTTGGCGCCTGAGTATGCTCAGTATGGCATGGTTTCTGTCAGAACGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTGACTTTGGTCTTGCAAAATGGAAGGCTGGCGGTGACAACATCCAGACAAGGATTCTGGGTCAAACAGGgtctggataaacttcacctgacagagctatcggctaattcttccattctatgttatccgtttttttataatgagtgattttctgtcatgtccaacag
- - - - - - - - - - - - TGGAAG