1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTCTCTCCCATGGGTGAAGCCTGTTCTAGGACGGATCTGACAGCTATCCATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatcggagcatctctgttgctgtctgctgccttctctacggggtactattatctttatctaacaagatggtgcctttatcgcag
species | Zea mays |
transcript | GRMZM2G099598_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|8383297|gb|BE056240.1|BE056240
genomic: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: ATCAGATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|211493754|gb|FL287302.1|FL287302
genomic: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|50335562|gb|CO530688.1|CO530688
genomic: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: AGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|71762708|gb|DR960645.1|DR960645
genomic: AGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|74234524|gb|DT642438.1|DT642438
genomic: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|76016248|gb|DT943418.1|DT943418
genomic: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: ATCAAATTCTATTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGGEST: gi|149112519|gb|EE295384.2|EE295384
genomic: ATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
EST: GGGAGCAACGAG CTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
genomic: GGGAGCAACGAGgtaaaagatc ... tttatcgcagCTATCGTTCCAGGAATGGACGCAGCAGATGAGGGACATGCTGGAAGCTAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTCTCCCATGGGTGAAGCCTGTTCTAGGACGGATCTGACAGCTATCCATCAAATTCTAGTGAACACGCATTACAGGGACGATGAAGGGAGCAACGAGgtaaaagatcggagcatctctgttgctgtctgctgccttctctacggggtactattatctttatctaacaagatggtgcctttatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA