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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgaggaaaggaaacccctggtgttaattctctataggctctttcgagtgtgttagttgtttttttgttcttttttatctttcatttccgtttgtaagccagcttgtgttaacaatcctcctattacactcag

Basic information

species Zea mays
transcript GRMZM2G099186_T03
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71309060|gb|DR790795.1|DR790795
EST:     AGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: AGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|78121658|gb|DV540042.1|DV540042
EST:     CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|6431785|gb|AW171989.1|AW171989
EST:     CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|83278963|gb|DV942971.1|DV942971
EST:     TGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: TGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|60345212|gb|DN212185.1|DN212185
EST:     CAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: CAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|31351638|gb|CD435995.1|CD435995
EST:     CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|60337501|gb|DN204474.1|DN204474
EST:     ACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: ACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|78103656|gb|DV522084.1|DV522084
EST:     GCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: GCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
EST: gi|71762933|gb|DR960870.1|DR960870
EST:     CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAG                         CCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA
genomic: CGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgag ... ttacactcagCCGATCCAGATCCCCATCTGGATCTCCCAGGGGTGGACGCCGTGAACGTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGTGATAAAAGCTATTCACGGTCTCCATCCCCACGTGGTGGACGTGGCCGCAGCCGGAGCTACAGCAGAAGCCGGAGCTATAGgtatgctgaggaaaggaaacccctggtgttaattctctataggctctttcgagtgtgttagttgtttttttgttcttttttatctttcatttccgtttgtaagccagcttgtgttaacaatcctcctattacactcag

- - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT