Sequence
atgc intronic sequence ATGC exonic sequenceAAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTATCTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaagttttatattagcttgttcatttgttttccggcttcattttacttcttattaacggaagcaatattgaaattttagcagtggaagaacgacacatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 7
AAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTATCTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaagttttatattagcttgttcatttgttttccggcttcattttacttcttattaacggaagcaatattgaaattttagcagtggaagaacgacacatt
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AAATACGTGGAGCACTTGGTTCTGTTAATCAGCTTTTTATCTGCATTGGAATTCTTGCTGCTCTGGTAGCTGGATTACCTCTGGCAGGAAACCCTGCTTGgtgagtttttgtcctagttcttttctcctgcttctgcttcatttagtgccttttacattcttatctggttgcacaaacaatcattttggtttatcgtctt
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G07780.1 (Glycine max), 5'ss of exon 7
AAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTATCTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaa-gttttatattagcttgtt--catttgttttc-cggcttcattttacttcttattaacggaagcaatattgaaattttagcagtggaagaacgacacatt-
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AAATTCGTGGTGCGCTAGGATCTGTTAATCAACTTTTTATATGCATTGGGATTCTTCTGGCACTGGTGGCTGGGCTGCCTCTGGCAGGAAACCCTATATGgtattgagttgtttcaccttaccactatttgtttttgcagggaggggtgagca-----taggggtgtgaatattttaacctaacctctttttgagctgttttctt
upper sequence: GRMZM2G098011_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 7
AAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTATCTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaagttttatat--tagcttgttcatt-tgttttccggcttcattttacttcttattaac---ggaagcaatattgaaattttagcagtggaagaacgacacatt
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AAATTCGTGGTGCGCTTGGGTCTGTCAATCAACTTTTTATTTGTATTGGGATTCTTGCAGCATTGGTGGCTGGATTACCTCTAGCCAGAAACCCTCTATGgtattcttcttgtcatatttcatttgctatatctatatgcaggaagaaagcttttggtagcttagcgagagataagtcaactaaataaactcaaaagcac------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13198611|gb|BG354413.1|BG354413EST: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTG GTGGAGGACAATGTTTGGAATTGCTGCAGTTCCATCCATTTTGCTGGCTGT
genomic: ATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaagtttta ... atttaatcagGTGGAGGACAATGTTTGGAATTGCTGTAGTTCCATCCATTTTGCTGGCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTTATCTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTTTGGCAGGAAATCCTGCCTGgtaagttttatattagcttgttcatttgttttccggcttcattttacttcttattaacggaagcaatattgaaattttagcagtggaagaacgacacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA