1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGATGTTGTTGATAAAGTCCTTCTAGGAAATAAGTGGTTAAGGAAAGCTTCTGGCATACAACCAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgcaattgcttatgtcttgtttcactttttcatatagttgtttgttggattgtgtagggagattaacttactgagttgacttaagaggcttat...
species | Zea mays |
transcript | GRMZM2G097959_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAG GACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTCEST: gi|32841273|gb|CD980954.1|CD980954
genomic: CAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgc ... cgtttttcagGACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTC
EST: TCTGGCATACAACCAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAG GACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTCEST: gi|211129123|gb|FL371883.1|FL371883
genomic: TCTGGCATACAACCAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgc ... cgtttttcagGACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTC
EST: AGAAGGGATATTGTCGATGATAGTTTAACATCAGAAATAATTGAAGAAAGTGCTGAAAGCTTGCTTGAGCCCCCAGAGEST: gi|32841023|gb|CD980704.1|CD980704
genomic: AGAAGGGATATTGTCGATGATAGTTTAACATCAGAAATAATTGAAGAAAGTGCTGAAAGCTTGCTTGAGCCCCCAGAG
EST: CCCTTATGTTGTTGATTCATTTGAAGAAAG GACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTCEST: gi|32840905|gb|CD980586.1|CD980586
genomic: CCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgc ... cgtttttcagGACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTC
EST: CAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAG GACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTCEST: gi|33092415|gb|CF052409.1|CF052409
genomic: CAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgc ... cgtttttcagGACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTC
EST: TCTGGCATACAACCAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAG GACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTCEST: gi|211481660|gb|FL377827.1|FL377827
genomic: TCTGGCATACAACCAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgc ... cgtttttcagGACTGCTGTTTCAATTGCCAATATTGCTACTACCAGCAGTTTAACTGCTTC
EST: AGAAGGGATATTGTCGATGATAGTTTAACATCAGAAATAATTGAAGAAAGTGCTGAAAGCTTGCTTGAGCCCCCAGAG
genomic: AGAAGGGATATTGTCGATGATAGTTTAACATCAGAAATAATTGAAGAAAGTGCTGAAAGCTTGCTTGAGCCCCCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGTTGTTGATAAAGTCCTTCTAGGAAATAAGTGGTTAAGGAAAGCTTCTGGCATACAACCAAAGTTCCCTTATGTTGTTGATTCATTTGAAGAAAGgtgcagatgcaattgcttatgtcttgtttcactttttcatatagttgtttgttggattgtgtagggagattaacttactgagttgacttaagaggcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA