Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGGTAAAGCTTGTAGATATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTGgtataatccttacttatggatcctacttattgttgttgcacagtctgaactgctgctgagtactagtgtttcttgattatgatgctttgtggaaacgata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G097502_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 7
GTGATGGTAAAGCTTGTAGATATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTGgtataatccttacttatggatcctacttattgttgttgcacagtctgaactgctgctgagtactagtgtttcttgattat-gatgctttgtggaaacgata
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GTAATGGAGAAGCTTGTAGACATTGTGCATTTCTTACATTTGGAGATACATGATGCCTTTGCTACTGCTGgtatgaattccaaacgttgataat-tttttttcccctgctcatagtaacctgaaggcctgcatcactgtccatcatctcttgatatgggagaaaaaggaga
upper sequence: GRMZM2G097502_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0031g02970.t01 (Vitis vinifera), 5'ss of exon 7
GTGATGGTAAAGCTTGTAGATATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTGgtata-------atccttacttatggatcctacttattgttgttgcacagtctgaactgctgctgagtactagtgtttc-ttgattatgatgctttgtggaaacgata
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GTGATGGAGAAGCTTGTAGATATTGTCCACTTTTTACATCTGGAGATACGCAATACCTTTGGCACTGTAGgtatgtatgcatatctcaagcaaaaacatatgtttattcttgtctcatcatcttttcccaagccattaaatcatatgtcattgaacacatagaactcttg--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78090767|gb|DV519141.1|DV519141EST: TATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTG ACAGTGAAGAGCCACAAGAACCTGCCAAACACCATAATAGATTGGGACCAG
genomic: TATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTGgtataatcct ... cttactgcagACAGTGAAGAGCCACAAGAACCTGCCAAACACCATAATAGATTGGGACCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGGTAAAGCTTGTAGATATTGTCCACTTCTTATATTTGGAGATATATAATGCCTTCGGTCGTCCTGgtataatccttacttatggatcctacttattgttgttgcacagtctgaactgctgctgagtactagtgtttcttgattatgatgctttgtggaaacgata
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT