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TTACGTGAAGGAGGGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctttgcttataattcaatattttagcatgccagactacagtattttcctggtaccaaattctcatcacttgactccaaccatagtaacttctt...
species | Zea mays |
transcript | GRMZM2G096553_T03 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CACAGGAAATCGATTTACAATTACTCTGAG GGGTGTTACTGCAGAATCTGAAGACATGATAAAAATTGCAGTAGATGGCCTEST: gi|31353291|gb|CD437648.1|CD437648
genomic: CACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctt ... attgatttagGGGTGTTACTGCAGAATCTGAAGACATGATAAAAATTGCAGTAGATGGCCT
EST: GGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAG GGGTGTTACTGCACAATCTGAAGACATGATAAAAATTGCAGTAGATGTCCTEST: gi|32931819|gb|CF036631.1|CF036631
genomic: GGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctt ... attgatttagGGGTGTTACTGCAGAATCTGAAGACATGATAAAAATTGCAGTAGATGGCCT
EST: GGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAG GGGTGTTACTGCAGAATCTGAAGACGTGATAAAAATTGCAGTAGATGGCCTEST: gi|61119485|gb|DN560446.1|DN560446
genomic: GGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctt ... attgatttagGGGTGTTACTGCAGAATCTGAAGACATGATAAAAATTGCAGTAGATGGCCT
EST: GGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAG GGGTGTTACTGCAGAATCTGAAGACATGATAAAAATTGCAGTAGATGGCCT
genomic: GGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctt ... attgatttagGGGTGTTACTGCAGAATCTGAAGACATGATAAAAATTGCAGTAGATGGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACGTGAAGGAGGGACTTGTTCTTGGTCAGCTCACAGGAAATCGATTTACAATTACTCTGAGgtagtgtctttgcttataattcaatattttagcatgccagactacagtattttcctggtaccaaattctcatcacttgactccaaccatagtaacttctt
- - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - AGCTCA