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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgtatactctttttgttgtggtcaaattcctgacttgtgctttccagactcaggttcctaatgtagagttgtatgtgctgcag

Basic information

species Zea mays
transcript GRMZM2G095757_T02
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 7
ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgtatactctttttgttgt--ggtcaa---attcctgacttgtgctttccagactcaggttcctaatgtagagttgtatgtgctgcag
 |||||||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| || |||||||| |||||| |||||||||||| |  ||  | ||    | ||||   |||  || ||| ||  |||   |   || ||||| |  |||  |   |||| ||||||
GTTTGTTATTGCCCATATCCTTGGATGGTGGGGGAAGGCTATAATGATAAGAAACCAACCACTTTTATGGGTATTATCAATTGGCTTTGAGCTAATGGAGgtatgcatttaatcttacacgatcaatttatttttggcttctgtcttctgaatctagattccttacatagtttcacatgtcctgcag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 8
ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgta-----tactctttttgttgtggtcaaattcctg---acttgtgctttccagactcag---gttcctaatgtagagttgtatgtgctgcag---------------------------------------------------
||||||| |||||||| |  ||||||||||||| ||||| ||| |||| || || ||||| ||| | ||||| || || ||||||||||||||  ||||||||     |  |||  ||  |    ||  |||  |    |   |||   |   |  | ||    | | ||| |     || | |||  ||                                                      
ATTTGTTCTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAACCCCTTCTTTGGGTGTTATCCATTGGTTTTGAGTTGGTGGAGgtaatccctgatctgattaatacactctgattttttcacataggtgtggttgtgggttagtgcatccgtaaagcttgattttttgttttgatatatctatatcttttgaattgcttacataccattctgtgttggcatcttcag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 10
ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgtatactctttttgttgtggt------caaattcctgactt--gtgctttccagactcaggttcctaatgtagagttgtatgtgctgcag----------------------------------------------------
||||||| |||||||| |  ||||||||||||| ||||| ||| |||| || || || || ||| | ||||| || |||||||||||||||||  ||||||||  | ||| |     |  |      | | ||  | || |  |||   |   |  | ||       ||  |   |||| | |  |                                                        
ATTTGTTTTAGCTCATGTTATTGGATGGTGGGGGAAGGCAATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTGGTTTTGAGTTGGTGGAGgtaagcccttatctgattaatacactccgattttttcacataggtgtggttatgggttagtgcatccata-aagcttgtttttcttttgatatatctatatcgtttgaattgcttacataacatctgtgttgtaatcttcag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv17s0000g03010.t01 (Vitis vinifera), 5'ss of exon 7
ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgtatactctttt--tgttgtggtca--aatt--cctgacttgtgctt---tccagactcaggttcctaatgtagagttgtatgtgctgcag---------
||||||  | ||||||||| |||| |||||||| || || |||||||| || || ||||| ||||| ||||| |||||| |||| |||||| ||||||||||||  |||| |  ||||    |||  || |  |  |  || |||||   | ||  ||   | |  || | ||  | | | | | ||             
ATTTGTGCTTGCTCATATCTTTGGTTGGTGGGGAAAAGCCATAATGATCCGCAATCAACCTCTTTTATGGGTTTTGTCATTTGGGTTTGAGCTAATGGAGgtatgttcttatgttgttcacttcacaaaatagcacggtttctgcttctgttcattcttttgcttttattttattgatttttttccttttccaaaaaaat

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 8
ATTTGTTATAGCTCATATCCTTGGATGGTGGGGTAAGGCTATAATGATACGAAACCAACCACTTTTGTGGGTCTTGTCAATTGGTTTTGAGTTAATGGAGgtatactctttttgttgtggtcaaattcctgacttgtgctttccagactcaggttcctaatgtagagttgtatgtgctgcag-----------------------------------------------------------------------
||||||| | ||||||||  |||||||||||||||||||||||||||| || || || || ||  | |||||  |||||||||| |||||| ||||||||||    |  ||    ||         |  ||  || ||| |   ||  |    |   |||| ||   ||||||||     |                                                                        
ATTTGTTGTGGCTCATATATTTGGATGGTGGGGTAAGGCTATAATGATTCGCAATCAGCCCCTCCTATGGGTGCTGTCAATTGGATTTGAGCTAATGGAGgtcagtttcttggtctgataatgttattttgtgttttgcctcttaggttgtcatggttaatctacc-ttgtatgtctaagaatgtgctcatgtttctgttctcaaactgactgtttgagttctataaagttaagttttatttgtcaatttcag