1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTGTGTTGTTATTGAAGACAGTACTATAGGGCTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattttctttttcggaacacttagggcttgattgggagcaaccggaatggagggaattaagggagctataatcacctgctattcaaaattgaata...
species | Zea mays |
transcript | GRMZM2G094978_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TCGCAAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCAG CTACACTGCAGAAGAGGACTTCGAEST: gi|88753379|gb|DY537520.1|DY537520
genomic: TCGCA-GCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGA
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|86467368|gb|DY233738.1|DY233738
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|13388479|gb|BG462185.1|BG462185
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAEST: gi|86470646|gb|DY237016.1|DY237016
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGA
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACCCTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|13558959|gb|BG550314.1|BG550314
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|211329033|gb|FL456230.1|FL456230
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|71764322|gb|DR962259.1|DR962259
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATTGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|16379404|gb|BI992921.1|BI992921
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|101388001|gb|EB816015.1|EB816015
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|10697624|gb|BE997348.1|BE997348
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|93011639|gb|EB637159.1|EB637159
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|71300514|gb|DR786312.1|DR786312
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGGTGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTEST: gi|60352425|gb|DN219398.1|DN219398
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|78075281|gb|DV503715.1|DV503715
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|71766391|gb|DR964328.1|DR964328
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|60357150|gb|DN224123.1|DN224123
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCATEST: gi|94478039|gb|EB706997.1|EB706997
genomic: CTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
EST: CAAAAGCTGCCGGCATGAAGTGTATTTTTACAAAAAGCGG CTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCAT
genomic: CAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattt ... atgtttccagCTACACTGCAGAAGAGGACTTCGAGACAGCAGATGCAGTGTTCGATTGCA-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGTTGTTATTGAAGACAGTACTATAGGGCTCGCAGCGGCAAAAGCTGCCGGCATGAAGTGTATCGTAACAAAAAGCGGgtacagattttctttttcggaacacttagggcttgattgggagcaaccggaatggagggaattaagggagctataatcacctgctattcaaaattgaata
- - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - AGCTGC