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GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt...
species | Zea mays |
transcript | GRMZM2G094497_T02 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|4681248|gb|AI629918.1|AI629918
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|67040204|gb|CO466459.1|CO466459
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32831681|gb|CD971359.1|CD971359
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32910787|gb|CF015599.1|CF015599
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|13125954|gb|BG316629.1|BG316629
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|33101985|gb|CF061945.1|CF061945
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAACGGTTCCATGGAACGGGTCACCCTTTTTCTGAATCTG GCTAATGATCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32928560|gb|CF033372.1|CF033372
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|31351441|gb|CD435798.1|CD435798
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32929168|gb|CF033980.1|CF033980
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|31351754|gb|CD436111.1|CD436111
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATTC-CCCCTCGGATTGCTCTAACEST: gi|33094782|gb|CF054776.1|CF054776
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTAT-CACCCCTCGGATTGCTCTAAC
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|33102163|gb|CF062123.1|CF062123
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|67020067|gb|CO448816.1|CO448816
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32838409|gb|CD978087.1|CD978087
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32850751|gb|CD990432.1|CD990432
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGGACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|194716810|gb|FK933969.1|FK933969
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32850726|gb|CD990407.1|CD990407
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGGACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|6021392|gb|AW066320.1|AW066320
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|33101471|gb|CF061431.1|CF061431
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|33102084|gb|CF062044.1|CF062044
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAACGGTTCCATGGAACGGGTCACCCTTTTTCTGAATCTG GCTAATGATCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|13125942|gb|BG316617.1|BG316617
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|211474175|gb|FL062083.1|FL062083
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|32831612|gb|CD971290.1|CD971290
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|33102277|gb|CF062237.1|CF062237
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|13125963|gb|BG316638.1|BG316638
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|13125933|gb|BG316608.1|BG316608
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACAEST: gi|31351755|gb|CD436112.1|CD436112
genomic: TTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCC-TTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
EST: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTG GCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
genomic: ATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaa ... tgttttacagGCTAACGACCCCACCATTGAACGTATTATCACCCCTCGGATTGCTCTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCATGGAGCGGGTCACCCTTTTTCTGAATCTGgtacctacaaggacttgtgaatttgtaaccaacattcatttatcattttatttcttctaagggcgccataatcaattctgcaatgttttacatgcatctt
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA