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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat...

Basic information

species Zea mays
transcript GRMZM2G094497_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggc--atgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat
 || |||||||||||||| || ||||| |||||||||||||| || ||||||||||||||||| |||||||| |  ||||||||||| |||||||| |||||||| ||    ||||  |   |||    || |  |||     ||| ||         |       |||||| |  |     |     ||||| | |     
CCTCTTTTCTGCTGCTGGTCTTCCTCATAATGAAATTGCTGCCCAAATTTGTCGTCAGGCTGGCCTTGTGAAAAGCTTGGAGAAAGGCAAGCATGCAGAGgtagccaagcatttctctcacataaagataatctgactatttgatgacccagtgagatttgggctcacatatatagcttaataactttagttgtacatgg--

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctac-tggcatgccctcc--cccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat-
    || || |||||||| ||||| || |||||||||||||| ||||| || |||||||||||  | || |||  | | || ||    |  || | |   ||||||  ||   |||  |||  |  |        ||||  |   |||| |      | | |    |  | |  |  |||   || |  || | ||    |  ||| 
---ATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGgtatatacaatgtattaaagtgaagtgaatttcctatgttaaatgctcctgaatcatgagttgaggacctcacattt---tgtattaatactttctta-gcatc

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat-----
    || || |||||||| ||||| || |||||||||||||| ||||| || |||||||||||  | || |||  | | || ||    |  || | |   ||||||  ||    ||  |||  |  |  | | |   ||      |||| |      |||    |  || |    ||  ||   || ||  ||   | ||        
----TTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGACTAGAAAAGTCTGATAATCTTCTCGAGGtatatacaacgtattaaagtgaatttcctatgtta--aatgtgcc-tgaattatatgtttaggacctcacattttgtattcatact-ttcttagcattggcaat

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 8
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat----------
    || || || ||||| ||||| || |||||||||||||| ||||| ||||||||||||||  | || |||  | | ||||||   |  || | |  |||||||  ||  |  ||    ||| |   |||       |    |||   | |   ||  |    ||| ||||   |   || | |||||||| ||                 
---ATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATCTGTCGTCAGGCTGGCTTAGTCAAGCGACTAGAGAAATCTGATAATCTTCTTGAGgta--tagcggatt---gcttatgg-tgccttttgtcaaatatgtattactagttgactgtgaaatatatgact---tgta-aaacagtttaatctctggttgtttagag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatgtgttctaacttcta--actgcaaccctactggc---atgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat
    || ||||||||||| || || || |||||||| ||||||||||||||||||||||||||||| || ||| | || |  ||||         ||     || ||||   || |||||| ||  | |  | | ||  |  |   || ||    | |||||   |     |  | ||||            | || |       
---TTTCTCTGCTGCTGGTCTTCCACATAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTAGTCAAG-CGTTTGGAAAAGACTGTTGATCTACTTGAGgtaatcctttgtaacttgtacaaatatatctcttatttctctataccaaagctcttatttgagttgtaactgtttctacaagtgtgttgatggatgtgtg-

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 8
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAA---AGGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat------
    |||||||| || || || || |||||||||||||||||||||||||| |||||||||||| | || |||   || |||||   ||  || | |   ||||||  | | |  || ||  ||     | |    |||| |        |     || |   | ||  |||    | |   |  | ||||||  | | ||        
---CTTTTCTGCCGCAGGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGTTTAGAGAAGTCAGATAATCTTCTCGAGgta--tcacgatttatacattactggtccgtgtctacagttggaaattggt--ttgtt--acaattataacagtgatcccttagacagttagacatacccattaca

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAG--GAAAGCATGCT----GAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaa-acatatttttcagtgcacaaacagttgaaaacacat-
       ||||||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| |||||||||   ||||| ||    || | | |  |    ||||||  | || ||  | |  ||   ||  | ||   | |    |    | ||   |||| ||    |  |   | |   ||||||  || ||   |||  || 
------CTCTGCTGCTGGTCTACCTCATAATGAGATTGCTGCTCAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAAAAGACTGAGAACTTAATTCAGGAGgtaaatcatttgcccca--ttaccaccaccactaaagtacttttgttttccaagtatcaaagtgtaagtgcctgtttctgcacattcactttctaactgatg

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat--
    |||||||||||||| || ||||| |||||||| ||||| || || |||||||||||||||||||| |||   ||||| |||   ||||| |     |||||| ||| | | | |  | ||     |       |  | ||||     |    | |    || || || | | |  |      ||  |||    | |     
---TTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCACAAATCTGTCGTCAGGCTGGTCTTGTAAAGCGGTTGGAAAAATCTGGAAATCTCCTAGAGgta-ctagtttttgcatattttactttctggaattcattgcat-ttggcaatgtaaaagtaataagatgtctctttggaattgaattgttattgataagaag

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA---GGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaac--agttgaaaacacat--------
    |||||||||||||| || ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||  ||||||||    ||||  |    |||||||  |  |    ||   || |  || | ||      ||||||    |     | |     |||| || ||  | |||  |  |||   |   || |  |||        
---TTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCTCAGATATGTCGGCAGGCTGGTCTTGTAAAGAGGTTGGAGAAGTCTGGAAGTCTCCTTGAGgta--tggtagactc--gctgc--acagaaatt----tggcatttaataaaattgaattgcaaaagatgttgattagtagaataactagggcaaagaaccattgttttat

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 6
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAG-GAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat
       ||||||||||| || |||||||| || ||||| || || ||||||||||| |||||||||||  ||   |||||||| | |||| | |  ||  |      ||| |  |       | |   ||||  |  ||    |   || |   |||   |                                       
-------TCTGCTGCTGGTCTTCCTCACAACGAGATTGCCGCACAAATTTGTCGTCAAGCTGGTCTTGTCCAGCGGTTGGAGAAGGAGAAAACCTCTTGGAG-----GATGAgcccgg-----tgaagacaacttt--tgtatcgttttcgctgctatgggag--------------------------------------

upper sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 7
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 7
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat---------
   ||||||||||||||| || || ||||| || |||||||| ||||||||||| || |||||||||||  |    |||||||||| |||| ||     ||  |  |     || |   |  | |    |    ||   |  || | ||  | | || |        | | | |    |||||  |    |  | || ||         
---GTTTTCTGCTGCTGGTCTTCCCCACAACGAGATTGCTGCGCAGATTTGTCGACAAGCTGGTCTTGTCCAACGGTTGGAGAAAGAAAAGAATCTCTTGGAGgtgaggaccttatgcatattga---aatatgtatcagattgacttctacttcatgcttt---tgtttgtctgcaagcacatgctagggttatcatattagaacgtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|194716810|gb|FK933969.1|FK933969
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211466590|gb|FL062041.1|FL062041
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGGTGAAGATAACAACTTTGGCTATTGGGGTTTGCCGCTATGGGA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGG-TGAAGATGACAACTTTG-CTATTGTG-TTTGCTGCTATGGGA
EST: gi|211459011|gb|FL062002.1|FL062002
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAA-GCATGCTGAA                         GGTGGGTGAAAATGACA-CTTTTGCTA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGG-TGAAGATGACAACTTT-GCTA
EST: gi|4681248|gb|AI629918.1|AI629918
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32829975|gb|CD969653.1|CD969653
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31358862|gb|CD443219.1|CD443219
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGAATGACA-CTTTGCTATTGTGTTTGCTGCTATGGGAGTGAA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGA-TGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAA
EST: gi|211474177|gb|FL062085.1|FL062085
EST:     TCGTCAAGCTGGTCTTGTGAAGACATTGGAGAAAG-AAAGCATGCTGAAG                         GGTGGTGAAGATGAACA-CTTTGCTATTG
genomic: TCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGA-Ggtagctaatg ... taacctgcagGGTGGTGAAGATGA-CAACTTTGCTATTG
EST: gi|211042620|gb|FL062102.1|FL062102
EST:     GTCGTCAGGCTGGTCTTGTGGAGACATTGGAGAAAGGAAA-CATGCTGAG                         GGTGGTGAAGATGAACA-CTTTGCTATTGTGTTTGCTGCTATGGGAGTGAA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGA-CAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAA
EST: gi|32838409|gb|CD978087.1|CD978087
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13150538|gb|BG320860.1|BG320860
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAA-GCATGCTGAG                         GGTGGTGAAGATGA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGA
EST: gi|32831681|gb|CD971359.1|CD971359
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32910787|gb|CF015599.1|CF015599
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13125954|gb|BG316629.1|BG316629
EST:     TGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: TGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211459001|gb|FL061992.1|FL061992
EST:     TCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAAGGAA-GCATGCTGAG                         GGTGGGTGA-GATGACAACTTTGCTAATGTGTTTGCTGCTATGGGAGTGAA
genomic: TCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA-GGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGG-TGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAA
EST: gi|31355490|gb|CD439847.1|CD439847
EST:     GTCGACAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211466591|gb|FL062042.1|FL062042
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGGAAGCATGCTGAG                         GGTGGTGAAGATGACAAACTTTTGCTAT-GTGTTTGCTGCTATGGGAGTGA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAA-CTTT-GCTATTGTGTTTGCTGCTATGGGAGTGA
EST: gi|32929168|gb|CF033980.1|CF033980
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33101985|gb|CF061945.1|CF061945
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32928560|gb|CF033372.1|CF033372
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31349484|gb|CD433841.1|CD433841
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31351385|gb|CD435742.1|CD435742
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211042631|gb|FL062113.1|FL062113
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAA-CATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31351754|gb|CD436111.1|CD436111
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211474179|gb|FL062087.1|FL062087
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAA-GCATGCTGAG                         GGTGGTGA-GATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAATGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33094782|gb|CF054776.1|CF054776
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211471645|gb|FL062070.1|FL062070
EST:     TCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAAGGAA-GCATGCTGAG                         GGGTGGTGAAGATGAC
genomic: TCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAA-GGAAAGCATGCTGAGgtagctaatg ... taacctgcagGG-TGGTGAAGATGAC
EST: gi|33102163|gb|CF062123.1|CF062123
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|67020067|gb|CO448816.1|CO448816
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32850751|gb|CD990432.1|CD990432
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211469119|gb|FL062057.1|FL062057
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAA-GCATGCTGAG                         GGTGGTGAAGATGACA-CTTTGCTAT-GTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32850726|gb|CD990407.1|CD990407
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13490658|gb|BG517422.1|BG517422
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33101471|gb|CF061431.1|CF061431
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211469111|gb|FL062049.1|FL062049
EST:     TCGTCAGGCTGGTCTTGTTGA-GACATTGGAAAAAGGAA-GCATGCTGAG                         GGTGGTGGAGATGACAACTTTGCTATTG
genomic: TCGTCAGGCTGGTCTTGT-GAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTG
EST: gi|33102084|gb|CF062044.1|CF062044
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13125942|gb|BG316617.1|BG316617
EST:     TGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: TGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211474175|gb|FL062083.1|FL062083
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|32831612|gb|CD971290.1|CD971290
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211459003|gb|FL061994.1|FL061994
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTT-GCCTGCTATGGGAGTGAA
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGC-TGCTATGGGAGTGAA
EST: gi|31358847|gb|CD443204.1|CD443204
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACA-CTTTGCTATTGTGTT-GCTGC-ATGGGAGTGA-C
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|33102277|gb|CF062237.1|CF062237
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|13125963|gb|BG316638.1|BG316638
EST:     ATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGCTGAA
genomic: ATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAG-TGAA
EST: gi|13125933|gb|BG316608.1|BG316608
EST:     GACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|211466585|gb|FL062036.1|FL062036
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAA-CATGCTGAG                         GGTGGTGAAGATGACA-CTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
EST: gi|31351755|gb|CD436112.1|CD436112
EST:     GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAG                         GGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC
genomic: GTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 970

ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2060

ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1346

ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1621

ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatg ... taacctgcagGGTGGTGAAGATGACAACTTTGCTATTGTGTTTGCTGCTATGGGAGTGAACATGGAAACAGCTCAATTCTTCAAACGTGATTTTGAAGAGAATGGTTCCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTGTTTTCTGCTGCTGGGCTCCCTCACAATGAAATTGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTGAAGACATTGGAGAAAGGAAAGCATGCTGAGgtagctaatgtgttctaacttctaactgcaaccctactggcatgccctcccccttatccaaaaaacatatttttcagtgcacaaacagttgaaaacacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaca