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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTCACACCATATCATCGAGGCATCTTTCAAAGCGTTTGCTCGGGCCCTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtctttccttactcagaacttttgtcggttttctagtgttatttcgatccacaccattctgtagatgtagttcgagttttctagtgtcgattgatatctgacattggtagaggataactgggtttagaagtttacaaccctgtcgtctcctgatatgtttcttggttgtctcaatggcag

Basic information

species Zea mays
transcript GRMZM2G094255_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g52710.1 (Oryza sativa), 5'ss of exon 7
AAAACTCACACCATATCATCGAGGCATCTTTCAAAGCGTTTGCTCGGGCCCTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtctttccttactcagaacttttgtcggttttctagtgttatttcgatccacaccattctgtagatgtagttcgagttttctagtgtcgattgatatctgacattggtagaggataactgggtttagaagtttacaaccctgtcgtctcctgatatgtttcttggttgtctcaatggcag
|||||||||||||||| || |||||| |||||||||| |||||| | ||||||||||| |||||||| |||||| ||||||| |  ||||||||||||||||  || ||  |||| |   ||    |  || ||    | |  ||| | |  ||  || |  |||| ||||      ||   ||| |       || | | |||  |     ||   ||   |    |  ||  ||| |     | | |   | | | | || ||||  ||| ||  || ||||
AAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGACAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGgttcgttttagcttattgcaaa----tagcgtttaggaaattctatgttgtgcccaactacactgttgatgc---ctga---ttcaaaaac---ttcacacctgcta-----agcatatggtttatctctgacctttgctga--tattgaaacatta-acgtatctttcttgacttgatcgcag

upper sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 7
AAAACTCACACCATATCATCGAGGCATCTTTCAAAGCGTTTGCTCGGGCCCTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtctttccttactcagaacttttgtcggttttctagtgttatttcgatccacaccattctgtagatgtagttcgagttttctagtgtcgattgatatctgacattggtagaggataactgggtttagaagtttacaaccctgtcgtctcctgatatgtttcttggttgtctcaatggcag
|||| || || ||||| || |||||| | |||||||| ||||||||||| |||||||| |||||||||||||| |  || || |  || ||| | || |||| ||  | || ||    | |     | | | |||| | | ||      ||   |    ||| | |  |  |  ||      | ||||| |   |||| | |     |                                                                            
AAAATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTTGCTCGGGCTCTTCGACAAGCAACAGAGTATGATCCACGTCGCCGTGGAACTATACCAAGgtatgg-tatctttg---aaattgccttttgattttgtgg-gtagacgagaattag---attttattcactttattatttgctgctagtattacttgaaaaccatttt----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76010862|gb|DT938032.1|DT938032
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|78027522|gb|DV495909.1|DV495909
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|12970168|gb|BG266848.1|BG266848
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|78115024|gb|DV533412.1|DV533412
EST:     GACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: GACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|31355338|gb|CD439695.1|CD439695
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|76284483|gb|DV024051.1|DV024051
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|47962518|gb|CN845227.1|CN845227
EST:     CAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|101397350|gb|EB820598.1|EB820598
EST:     CTTCGACAGGCAACAGAGTATGACTTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|94478728|gb|EB707686.1|EB707686
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|71327961|gb|DR800622.1|DR800622
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|60349510|gb|DN216483.1|DN216483
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|211377776|gb|FL432413.1|FL432413
EST:     GCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: GCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|74232835|gb|DT640749.1|DT640749
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|78086465|gb|DV514858.1|DV514858
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAG
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAG
EST: gi|31664107|gb|CD573287.1|CD573287
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
EST: gi|78107717|gb|DV526135.1|DV526135
EST:     CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAG                         CTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT
genomic: CTTCGACAGGCAACAGAGTATGACCTGCGCCGTCAAGGCACTGTCCCCAGgtctgtcttt ... tcaatggcagCTCCAAAGGTGTCTTGTCGAGATCATAGCATCGCAGTTTGGACGAACGCAT