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GCTGCCATTGTTGGTCCAGGAAATGAATTAGGCAAACCAATTGATATCAATGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctattattttcaattttcatctgtttaagattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcag
species | Zea mays |
transcript | GRMZM2G093359_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|149089319|gb|EE178541.2|EE178541
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGNACCTTEST: gi|60401451|gb|DN234258.1|DN234258
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTT
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|60338752|gb|DN205725.1|DN205725
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|12046552|gb|BF728691.1|BF728691
genomic: TAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|19058676|gb|BM737343.1|BM737343
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTNGGACCTTTCCTTGGGAEST: gi|211126137|gb|FL125779.1|FL125779
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG -CAGANATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|87154062|gb|DY398851.1|DY398851
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: GATGAATGA-TGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|149094603|gb|EE180134.2|EE180134
genomic: GATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGGCTACCTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCEST: gi|71424524|gb|DR806343.1|DR806343
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTC
EST: TGATGCTGAAGAACATATTTTNGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|60397238|gb|DN230054.1|DN230054
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|149106512|gb|EE188404.2|EE188404
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAEST: gi|149106513|gb|EE188405.2|EE188405
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
EST: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCCTTGG-EST: gi|86466217|gb|DY232590.1|DY232590
genomic: TGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCC-TTGGG
EST: GATGCTGAAGAACATA-TTTTGGCCCTAACTTTGATGAATGATTGGAGCG CCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
genomic: GATGCTGAAGAACATATTTTTGG-CCTAACTTTGATGAATGATTGGAGCGgtattctatt ... aatatgtcagCCAGAGATATTCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCCATTGTTGGTCCAGGAAATGAATTAGGCAAACCAATTGATATCAATGATGCTGAAGAACATATTTTTGGCCTAACTTTGATGAATGATTGGAGCGgtattctattattttcaattttcatctgtttaagattaagatgcatgatgtgattatactgagctgcatgatgtgattaatatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG