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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt...

Basic information

species Zea mays
transcript GRMZM2G093316_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 5'ss of exon 7
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt-----
 ||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||||| || |||||||||||||||| || ||||     ||||  |||   |     | ||     ||||  |||||  ||||        |     |  | | | |       ||  ||       
GGACATTAAAGGTGCAAACATACTGGTAGATCCTAATGGTCGTGTAAAGCTTGCTGACTTCGGAATGGCAAAACATgtaaattctctg-----tttcaaattgtaaaaaaaaaaatctttctcatttgtcaggaataactaaaatttaaagcaaaagcattattagatgtaattccttgta

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA10G37730.1 (Glycine max), 5'ss of exon 8
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttt------------tctgcatgttttcttattcctatttgtaga--aagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt
 || |||||||| ||||| ||| ||||||| || | ||| || || ||| | || |||||||| ||||||||||||||||| ||            | | ||   |   ||||  ||   | |||   ||   | | | || | |||| | |  |   ||    |  ||    |||              
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagagataataactatccagtgtccattatatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg--------------

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA09G24970.2 (Glycine max), 5'ss of exon 6
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttc---tgcatgttttcttat-tcctatttgtagaa-agaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt
 ||||||||||| ||||| ||| |||||||  |||||||||| || ||| | || |||||||| |||||||| |||||||| ||     |  | |||| ||| | | ||| |||||| | |  ||      | ||          |   ||  | |   | |   || |      |     
GGACATCAAAGGAGCAAATATACTGGTAGATACTAATGGCCGGGTTAAGTTGGCAGACTTTGGCATGGCAAAGCATgtaagcttggagataaaagtttgcttttatgctaattgtaggatatgaaaattggtttctgttgcttagtgaaattatgaataaaggtttgaaaataact-----

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G30030.2 (Glycine max), 5'ss of exon 7
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttc---tgcatgttttcttattcctatttgtagaaagaaactcaa--atgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt
 ||||||||||| ||||| ||| |||||||  |||||||||| || ||| | || |||||||| |||||||| |||||||| ||     |  | ||| || | ||  | |   |  ||   || |  |  || | || | | || | |  |  | |  ||    ||| |    | |     
GGACATCAAAGGAGCAAATATACTGGTAGATACTAATGGCCGGGTTAAGTTGGCAGACTTTGGCATGGCAAAGCATgtaagcttggagataaaagttatccttttaatttgcatttaagctaattgtaggatatgaaaattggtttctgttgcttagtgaaattatgaataaaggt-----

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 6
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttt-tctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt
 ||||| ||||| |||||||||||||| ||||||| ||| ||  ||||  | || || |||||||||||||| ||||||||    | |  |||||||  | |||   ||    || |     | |  || |   | | | || | | |   |  |     |   | |  ||      
GGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATgtaagagcatttatatgttttactgttcaacttctatgacattggataatctgacttgagttgaatatcagcacaatgggtttgactgaccaggtcaacc-

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G30100.2 (Glycine max), 5'ss of exon 1
------------------------AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaa--tagtattttatcttcaccgaggaaatgcagcgcgttctttt
                         || |||||||| ||||| ||| ||||||| || | ||| || || ||| | || |||||||| ||||||||||||||||| ||   | ||  |  ||  |   ||||    | |      |  |   | ||  |  |||   |  |  ||      |||     || |   |  |  
CTGAAATTGCATTTATTTGTGAAGGGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagag-ataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg-

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA20G30100.1 (Glycine max), 5'ss of exon 7
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttttctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaa--tagtattttatcttcaccgaggaaatgcagcgcgttctttt
 || |||||||| ||||| ||| ||||||| || | ||| || || ||| | || |||||||| ||||||||||||||||| ||   | ||  |  ||  |   ||||    | |      |  |   | ||  |  |||   |  |  ||      |||     || |   |  |  
GGATATCAAAGGAGCAAATATACTGGTAGATCCAACTGGTCGGGTCAAGTTGGCAGACTTTGGCATGGCAAAACATgtaagcttagag-ataataactattcagtattcactgtatctgcatttaggctaaatgagttagatatgaacattggattgggatgcctagtgaaattatg-

upper sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 6
AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagt------tttctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgtt------ctttt----------------------------------
 ||||||||||| ||||| |||||||| || ||| |||| || |||||  ||||||| ||||||||||||||||||||| ||      | |||||||  | | || |   | | |   |   |||  |    | |   ||  |  |  | ||||  |   |  |     |||    |      ||||                                   
GGACATCAAAGGAGCAAATATATTGGTGGATCCTCATGGACGAGTAAAAGTTGCTGATTTTGGGATGGCAAAACATgtatgtatatgttctctgcattctctgttttgtttttgtcctgtttgaatttttcctttacgcagaaacaactgatctgaataaactatgctaagcctagttagaaactttcctaagtctaatacaaattcataaacaaaatgcag