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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCAGTTGCCACAATTGCATCATGCAGTGGAATGTTTCTTCCAATGTTAATAGCATGCAGTCTCTTCTTTGTTGAGCTACTGTTTGCAATATTGCAGgtgcgtcattctgttgtctacttcacttcagtggttgcagttcccaaaaagtgatatatgcttcaagttatgtttgcggtctgcttaggatcaccctgtc...

Basic information

species Zea mays
transcript GRMZM2G093278_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093278_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g11260.1 (Oryza sativa), 5'ss of exon 7
AGGAGCAGTTGCCACAATTGCATCATGCAGTGGAATGTTTCTTCCAATGTTAATAGCATGCAGTCTCTTCTTTGTTGAGCTACTGTTTGCAATATTGCAGgtgcgtcattctgttgtctacttcacttcagtggttgcagttcccaaaaagtgatata----tgcttcaagttatgtttgcggtctgcttaggatcaccctgtc
||||||| |||| ||||||||| | ||||||||||||||  |||| ||||| || ||||||||  | ||  || ||||||| || || | |||||| |||||  || |||   | |  |||||| ||    |  ||    ||   | | | | |  |     |||||||| |||| |||    |||| |     | || ||   
AGGAGCAATTGCTACAATTGCAGCCTGCAGTGGAATGTTCATTCCGATGTTCATCGCATGCAGCATTTTTCTTCTTGAGCTGCTCTTGGTAATATTTCAGgtaagttattgcttggattacttc-ctcttttattttttttttggagacaatcacttccttttgcttcaa-ttattttttatatctggtggttgttacactt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285411|gb|DV024979.1|DV024979
EST:     TAATAGCATGCAGTCTCTTCTTTGTTGAGCTACTGTTTGCAATATTGCAG                         GTTCCTTTTCACATGGCTAAAAACTCTTTCCGCGGAACAAGCAGACATCCC
genomic: TAATAGCATGCAGTCTCTTCTTTGTTGAGCTACTGTTTGCAATATTGCAGgtgcgtcatt ... tgctgcccagGTTCCTTTTCACATGGCTAAAAACTCTTTCCGCGGAACAAGCAGACATCCC