1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACAATGTTGTGAATGGCCTGTGCACTCCAATCCCTGATCAATCGGCCCCAGTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataacactactgcatttttagttcctgagcttcgcgaagatgcctatcatatctcctccatttcctgaccaaacaatacattgccatatttccctcatttcctaaccaaacagtacattggttgtgcatgaaaaaaaaaaatgtag
species | Zea mays |
transcript | GRMZM2G093101_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|149086646|gb|EE176187.2|EE176187
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|71312490|gb|DR792777.1|DR792777
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|149094915|gb|EE180496.2|EE180496
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|94478734|gb|EB707692.1|EB707692
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|110955015|gb|EE175067.1|EE175067
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|76288887|gb|DV028455.1|DV028455
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|160481548|gb|EY254380.1|EY254380
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGCCCTTTCAGGGEST: gi|101389710|gb|EB816789.1|EB816789
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTT-CAGGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTATTCGGCCTTCAGGGAGGGGAGCTTCGGEST: gi|22491027|gb|BU050950.1|BU050950
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGGAGGCGAGCTTCGEST: gi|71761395|gb|DR959332.1|DR959332
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGG-AGGCGAGCTTCG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|71759863|gb|DR957800.1|DR957800
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGGEST: gi|148938421|gb|EC882739.2|EC882739
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
EST: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAA CATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
genomic: GTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataac ... aaaaatgtagCATGTCGCAGCCGCAGCCGAGCTACTCGGCCTTCAGGGAGGCGAGCTTCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATGTTGTGAATGGCCTGTGCACTCCAATCCCTGATCAATCGGCCCCAGTTTACATCACCATCGGTGATGGAGGGAACCAGGAAGGATTGGCTACCAAgtaagataacactactgcatttttagttcctgagcttcgcgaagatgcctatcatatctcctccatttcctgaccaaacaatacattgccatatttccctcatttcctaaccaaacagtacattggttgtgcatgaaaaaaaaaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG