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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAGgtgatttcattgtccacttgcgcatatttttttccatggtatattggtcacaaattttttcccgttatttcctgctcgcggccatatagggtgacaatga...

Basic information

species Zea mays
transcript GRMZM2G092991_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092991_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g29510.1 (Oryza sativa), 5'ss of exon 8
GCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAGgtgatttcattgtccacttgcgcatatttttttccatggtatattggtcacaaattttttcccgttatttcctgctcgcggccatatagggtgacaatga---
|| |||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||| |  ||||  |||| |  |||  |||    || ||||  ||   |     ||  |   ||  ||  || |  | |   | ||  | |    || |   
GCACTGGACTCATTTAATACAGCTGTGGTCTCTCCTGTGTACTACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtacttgtt-actttcaaatagctttaaa-attgtat-ctgcaaatgtgattcctgtagtgtttgtctccctgagagaaaatgcgctccagattagta

upper sequence: GRMZM2G092991_T03 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g29510.4 (Oryza sativa), 5'ss of exon 7
-------GCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAGgtgatttcattgtccacttgcgcatatttttttccatggtatattggtcacaaattttttcccgttatttcctgctcgcggccatatagggtgacaatga---
       || |||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||| |  ||||  |||| |  |||  |||    || ||||  ||   |     ||  |   ||  ||  || |  | |   | ||  | |    || |   
GTTGCAGGCACTGGACTCATTTAATACAGCTGTGGTCTCTCCTGTGTACTACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtacttgtt-actttcaaatagctttaaa-attgtat-ctgcaaatgtgattcctgtagtgtttgtctccctgagagaaaatgcgctccagattagta