Sequence
atgc intronic sequence ATGC exonic sequenceGGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataaatgttcctttggaactcttatgatattatctggagctcttatttcttcattatatataacagtcaagatttgttttaagttagcaacggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092776_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 5'ss of exon 5
----------------------GGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataaatgttcctttggaac--tcttatgatattatctggagctcttatttcttcattatatataacagtcaagatttgttttaagttagcaacggt
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GGCACACTTGTCCCTGTTATAGGAGCTAGCGGATTTGCTGCTATGGCTACCGCTGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCATCATTTGGAGgtgtgtctacatgttcttcaaaacccttctggtgatgttgttttgagctttcgtttcgtcatgctacattactatcagctgcagtctccctttccttttg--
upper sequence: GRMZM2G092776_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA16G24310.1 (Glycine max), 5'ss of exon 5
----------------------GGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataaatgttcctttggaactct-tatgatattatctggagctcttatttcttcattatatataacagtcaagatttgttttaagttagca-acggt--
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GGTACTCTGATCCCTGTAATTGGTGCAAGTGGGTTTGCTGCAGCTGCTAGTGCTGCAGGAACTGTTGCTGGTTCTGTTGCTGTTGCTGCATCATTTGGAGgtttatatttgcttatatatgtgattggatttgctagaattc---gctcatgccatgttactatagcttccatccctcactt-ttttaagttagtgtgtaattc
upper sequence: GRMZM2G092776_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA11G07870.1 (Glycine max), 5'ss of exon 4
----------------------GGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataa----atgttcctttgga----actcttatgatattatctggagctcttatttcttcattatatataacagtcaagatttgttttaagttagcaacggt
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GGTACTCTGATTCCTGTAATTGGAGCAAATGAATTTGCTGCAGCTGCTAGTGCTGCTGGAACTGTTGCTGGTTCTGTTGCCGTTGCTGCATCATTTGGAGgtacatgtttccttatatgtgattgggctttactataatcttctcatgttgtgctatcatgccttcaatttatacagaaattaaa--tagccttttgtaaat------
upper sequence: GRMZM2G092776_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA06G02950.1 (Glycine max), 5'ss of exon 5
----------------------GGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataaatg-ttcctttggaac-tcttatgatattatctggagctcttatttcttcattatatata---acagtcaagatttgttttaagttagcaacggt----------------------------------------------------------
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CTAGGCGGCATTGTTCCTGCCATTGGTGGTGGATTTGCTGCTGCAGCAACCGCTACAGGATCTGCTGTTGGATCTGTGGCTGTTGCTGCATCATTTGGAGgtgtggaggagtaatttggttaatacatgttgtgaaagcattcatcttcaatagaacaactagaaatttacatacaacctatatatatttgtggcgagagggacttggacagttattcaatgtatgggttaatgctcagttacctgcttcttttgtaattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116827223|gb|EC871106.1|EC871106EST: TGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAG CTGCTGGGGCTGGCTTGACGGGTACCAAAATGGCAAGACGAATTGGTAAAG
genomic: TGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataa ... gacaaattagCTGCTGGGGCTGGCTTGACGGGTACCAAAATGGCAAGACGAATTGGTAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGCTAGTGGATTTGCTGCTATGGCTGCTGCGGCAGGATCTGTTGCTGGCTCTGTGGCAGTTGCTGCCTCATTTGGAGgttggtataaatgttcctttggaactcttatgatattatctggagctcttatttcttcattatatataacagtcaagatttgttttaagttagcaacggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG