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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAAGGGATGTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttgttataattgatctacttaatgtttcacatcaagtctactagtagtacagttgcacaagggaaattttataatgctgtatgacctaaatag...

Basic information

species Zea mays
transcript GRMZM2G090647_T04
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090647_T04 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os01g37832.1 (Oryza sativa), 5'ss of exon 8
AACAAAAGGGATGTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttgttataatt--gatctacttaatgtttcacatcaagtctactagtagtacagttgcacaagggaaattttataatgctgtatgacctaaatag-
|||||||||||||| || || |||||||| |||||| | ||||| ||||| ||||||||||||||||  || |||| |||   | ||||| | |||     ||    | ||  |  ||   | |||        |   ||| |||    ||   |     | || 
AACAAAAGGGATGTTGTGGCCACAATTGTGTATGAAATAATGCCTAATCCATCTGATCACAAgtaag--ttattatgatttgaaactactca-tgtcatttattttttttaaaaagagactatttgttatttctaccatttctaaaatagtgaaattatgaaagg

upper sequence: GRMZM2G090647_T04 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G29400.1 (Glycine max), 5'ss of exon 8
AACAAAAGGGATGTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttgttataattgatctacttaatgtttcacatcaagtctacta-gtagtacagttgcacaagggaaattttataatgctgtatgacctaaatag-
   ||||||||||| ||||| || ||||| |||||  | ||||| ||||||||||| ||||||||||  |||   |  | |   || |  || ||     |  | | |  ||  |  | || |  ||       |  ||                |||   || 
TTGAAAAGGGATGTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattgaactcttggcattatt--atattgttagttgatttttttatatccttcaatgccattcatttatgttgtgtgcatcaaggaggctagcaagt

upper sequence: GRMZM2G090647_T04 (Zea mays), 5'ss of exon 7
lower sequence: Vv04s0008g00760.t01 (Vitis vinifera), 5'ss of exon 8
AACAAAAGGGATGTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagc-----tttgttataattgatctacttaatgt-ttcacatcaagtctactagtagtacagttgcacaagggaaattttataatgctgtatgacctaaatag
   ||  ||||||| ||||||||||| || |||||| | |  || ||||||||||||||||||||||      ||||   | || |      ||    | ||||  |    |  |  | | ||  | |||  |     | ||    || | || ||   | |      
TTGAAGCGGGATGTTGTTGCAACAATCGTGTATGAAATTACTCCAAATCCTTCTGATCACAAgtaagtcattgtttgccttcatgggatggttttgaatgttcagttgctcttcaacaattgttgatttgtgcttaa-acatacattagttctttacatcatg-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47962698|gb|CN845407.1|CN845407
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|5686889|gb|AI939803.1|AI939803
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATC-CAA                         AACAAAATCTGAGACTGGAGGAGGTTTNTGGCATGTGGAGTAGACATCATC
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|71770109|gb|DR968046.1|DR968046
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|30705964|gb|CD058985.1|CD058985
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|76918843|gb|DV167481.1|DV167481
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|5018209|gb|AI714402.1|AI714402
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|211242536|gb|FL481660.1|FL481660
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|211164192|gb|FL363087.1|FL363087
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA
EST: gi|60336843|gb|DN203816.1|DN203816
EST:     GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCGTCCGATCACAA                         AACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTCGAGTAGACATCATA
genomic: GTAGTTGCAACAATTGTATATGAAGTCATGCCCAATCCTTCTGATCACAAgtaagctttg ... tcccgtgcagAACAAAATCTGAGACTGGAGGAGGTTTCTCGCATGTGGAGTAGACATCATA