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GAAGCTTGATGACATCGAGAAGGTTTTGGAACCTCTCTTTACCTATTGGAATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggattcttctttttttttctgcatatggtgttcctgtcaataatttagtccatttggaggtggtgaatcgtttaggatttcactctcaggactg...
species | Zea mays |
transcript | GRMZM2G090338_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|30087026|gb|CB885234.1|CB885234
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|60339740|gb|DN206713.1|DN206713
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|32808002|gb|CD960236.1|CD960236
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCGTCAEST: gi|71533637|gb|DR784396.1|DR784396
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: GCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|76015451|gb|DT942621.1|DT942621
genomic: GCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|60349845|gb|DN216818.1|DN216818
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|67030464|gb|CO459213.1|CO459213
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: TGGCACACGCCCAG-AAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|78114427|gb|DV532816.1|DV532816
genomic: TGGCACACGCC-AGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|32802957|gb|CD955193.1|CD955193
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCGTCAEST: gi|32825466|gb|CD965188.1|CD965188
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCGTCAEST: gi|71330578|gb|DR802057.1|DR802057
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|60355018|gb|DN221991.1|DN221991
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|31909623|gb|CD651011.1|CD651011
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|47961924|gb|CN844633.1|CN844633
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCTCACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|13558141|gb|BG549497.1|BG549497
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: GAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|60400045|gb|DN232852.1|DN232852
genomic: GAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|110540151|gb|EE044071.1|EE044071
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|60343246|gb|DN210219.1|DN210219
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|211330976|gb|FL100738.1|FL100738
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACNAACCGAACA GGATTCGACAAATTGAAAGAEST: gi|76917902|gb|DV167065.1|DV167065
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|71448420|gb|DR829470.1|DR829470
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|148947629|gb|EC893109.2|EC893109
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|149085314|gb|EE174820.2|EE174820
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|101384562|gb|EB814326.1|EB814326
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|211113699|gb|FL397738.1|FL397738
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCAEST: gi|32828041|gb|CD967719.1|CD967719
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
EST: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACA GGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCGTCA
genomic: ATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggat ... cgtattccagGGATTCGACAAATTGAAAGAGGTAGTGAATAAGTGGGCAGAGTCACCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCTTGATGACATCGAGAAGGTTTTGGAACCTCTCTTTACCTATTGGAATGGCACACGCCAGGAAGGCGAATCTTTTGGAAGCTTCACAAACCGAACAgtaagtggattcttctttttttttctgcatatggtgttcctgtcaataatttagtccatttggaggtggtgaatcgtttaggatttcactctcaggactg
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