1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTATATTGTGGATGAGGTCAAAGACAAAAGTGGCCAACAGATGGATGTGCTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctcatctttgttcctagcaagcatagttgtacttttgtttctgtttgtgcagttaatgaaattctttggaaaaaaactgcatgtaattgccaacctgagaacatttagtttcttacagcactattcctacttgttcttaagtttacctaatgtactgagtcttctgtcaccctag
species | Zea mays |
transcript | GRMZM2G088653_T01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGG ATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGAEST: gi|71305240|gb|DR788757.1|DR788757
genomic: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctca ... gtcaccctagATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGA
EST: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGG ATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGAEST: gi|78084564|gb|DV512957.1|DV512957
genomic: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctca ... gtcaccctagATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGA
EST: CTTTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGG ATGGGAGTGCGGCATGTTTATGCTCAAATACATTGACTTTTACAGCAGAGAEST: gi|5439429|gb|AI820350.1|AI820350
genomic: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctca ... gtcaccctagATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGA
EST: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGG ATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGAEST: gi|78025320|gb|DV493707.1|DV493707
genomic: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctca ... gtcaccctagATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGA
EST: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGG ATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGAEST: gi|12971305|gb|BG267416.1|BG267416
genomic: CTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctca ... gtcaccctagATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGA
EST: CTTCCTTTGCAGGAGAATGG ATGGGACTGCGGCATGTTTATGCTCAAATCCATTGACTTCTACAGCAGAGA
genomic: CTTCCTTTGCAGGAGAATGGgtacttctca ... gtcaccctagATGGGACTGCGGCATGTTTATGCTCAAATACATTGACTTCTACAGCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTATATTGTGGATGAGGTCAAAGACAAAAGTGGCCAACAGATGGATGTGCTCTCATGGAAGCAGGAAGGTGTCAAAAACCTTCCTTTGCAGGAGAATGGgtacttctcatctttgttcctagcaagcatagttgtacttttgtttctgtttgtgcagttaatgaaattctttggaaaaaaactgcatgtaattgccaacctgagaacatttagtttcttacagcactattcctacttgttcttaagtttacctaatgtactgagtcttctgtcaccctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA